View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_26 (Length: 343)
Name: NF7839_low_26
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_26 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 27156109 - 27156435
Alignment:
| Q |
1 |
tcaagactcttaaggctggtagtgggcagggagatagggagttcagggccgaagtggagatcattagccgtgttcatcatcggcatttggtatcgttggc |
100 |
Q |
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| T |
27156109 |
tcaagactcttaaggctggtagcgggcagggagatagggagttcagggccgaagtggagatcattagccgtgttcatcatcggcatttggtatcgttggc |
27156208 |
T |
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| Q |
101 |
tggttattgtatatctgaggagcaaagagtgcttatctacgagtttgttcctaatggaaatcttcatcatcacttgcatggtaatgtgagtttcccttta |
200 |
Q |
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| T |
27156209 |
tggttattgtatatctgaggagcaaagagtgcttatctacgagtttgttcctaatggaaatcttcatcatcacttgcatggtaatgtgagtttcccttta |
27156308 |
T |
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| Q |
201 |
ttttccttacaaaaattaagaaaatagaatttatatatgttcgaaagccgccttagttggttgctgccgacccnnnnnnnggatcgattcgttgttaatc |
300 |
Q |
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| T |
27156309 |
ttttccttacaaaaattaagaaaatagagtttatatatgttcgaaagccgccttagttggttgctgccgaccctttttttggaccgattcgttgttaatc |
27156408 |
T |
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| Q |
301 |
ttatgcatctttattgtgttgggtgtg |
327 |
Q |
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| T |
27156409 |
ttatgcatctttattgtgttgggtgtg |
27156435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 12 - 194
Target Start/End: Complemental strand, 14799047 - 14798865
Alignment:
| Q |
12 |
aaggctggtagtgggcagggagatagggagttcagggccgaagtggagatcattagccgtgttcatcatcggcatttggtatcgttggctggttattgta |
111 |
Q |
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| T |
14799047 |
aaggccggtagtggtcaaggagagagggaattcagagcagaggttgatactattagtcgtgttcatcatcgacatttggtatcgttgattggctattgta |
14798948 |
T |
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| Q |
112 |
tatctgaggagcaaagagtgcttatctacgagtttgttcctaatggaaatcttcatcatcacttgcatggtaatgtgagtttc |
194 |
Q |
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| T |
14798947 |
tagctgagcaacaaagagtcctcatttatgagtttgttcctaatgggaatcttgatcaacatttgcatggtaacgtgagtttc |
14798865 |
T |
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