View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_27 (Length: 325)
Name: NF7839_low_27
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 308
Target Start/End: Complemental strand, 35900984 - 35900677
Alignment:
| Q |
1 |
agtgtgaataaacgtctcacatcaaagtttatgaaaaataaagagagcaacactaaacttagccatgtcattcctctatatttggcactgtccttatagt |
100 |
Q |
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| T |
35900984 |
agtgtgaataaacgtctcacatcaaagtttatgaaaaataaagagagcagcactaaacttagccatgtcattcctctatatttggcactgtccttatagt |
35900885 |
T |
|
| Q |
101 |
caagagtattgtccaagaacacagcaataatcaatgcaacagttggtgaagaatagaagatggtattcaggaagtcattgaactgcaaaatcaaaggaaa |
200 |
Q |
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| T |
35900884 |
caagagtattgtccaagaacacagcaataatcaatgcaacagttggtgaagaatagaagatggtattcaggaagtcattgaactgcaaaatcaaaggaaa |
35900785 |
T |
|
| Q |
201 |
gacatatatttttatcaataaaacttagttaagaaaaatattgtatatcaagctccatcataggaaagcttttcacacttcggtttcgcgctttctatcc |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
35900784 |
aacatatgtttttatcaataaaacttagttaagaaaaatattgtatatcaagctccatcataggaaagtttttcacacttcggtttcgcgctttttatcc |
35900685 |
T |
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| Q |
301 |
cttgatcc |
308 |
Q |
| |
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|||||||| |
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| T |
35900684 |
cttgatcc |
35900677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 63 - 223
Target Start/End: Complemental strand, 35898112 - 35897952
Alignment:
| Q |
63 |
ccatgtcattcctctatatttggcactgtccttatagtcaagagtattgtccaagaacacagcaataatcaatgcaacagttggtgaagaatagaagatg |
162 |
Q |
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||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35898112 |
ccatggcattcctctatctttggcactgtccttatagtcaagagtattgtccaagaacacagcaataatcaatgcaacagttggtgaagaatagaagatg |
35898013 |
T |
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| Q |
163 |
gtattcaggaagtcattgaactgcaaaatcaaaggaaagacatatatttttatcaataaaa |
223 |
Q |
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| T |
35898012 |
gtattcaggaagtcattgaactgcaaaatcaaaggaaaaacatatattttcatcaataaaa |
35897952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 190
Target Start/End: Complemental strand, 5044829 - 5044702
Alignment:
| Q |
63 |
ccatgtcattcctctatatttggcactgtccttatagtcaagagtattgtccaagaacacagcaataatcaatgcaacagttggtgaagaatagaagatg |
162 |
Q |
| |
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||||| |||||| |||| ||||| || | ||| || |||||||| |||||||||||||| |||| ||| ||||||||||| | || || ||||||| |
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| T |
5044829 |
ccatggcattcccctatctttggagctattcttgtaatcaagagtgttgtccaagaacacggcaacaatgaatgcaacagtcgaggatgagaagaagata |
5044730 |
T |
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| Q |
163 |
gtattcaggaagtcattgaactgcaaaa |
190 |
Q |
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||||| || || ||||||||||| |||| |
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| T |
5044729 |
gtattgagaaaatcattgaactgaaaaa |
5044702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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