View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7839_low_32 (Length: 291)

Name: NF7839_low_32
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7839_low_32
NF7839_low_32
[»] chr4 (16 HSPs)
chr4 (1-273)||(5564923-5565195)
chr4 (1-249)||(5858211-5858459)
chr4 (58-273)||(5605240-5605455)
chr4 (43-240)||(3749108-3749305)
chr4 (4-221)||(5570938-5571155)
chr4 (1-269)||(5852818-5853086)
chr4 (107-273)||(5583248-5583414)
chr4 (134-225)||(252282-252373)
chr4 (149-269)||(5553338-5553456)
chr4 (58-123)||(5895061-5895126)
chr4 (42-128)||(5886200-5886286)
chr4 (46-99)||(5847985-5848038)
chr4 (149-221)||(5539220-5539292)
chr4 (4-65)||(5559340-5559401)
chr4 (20-56)||(5583161-5583197)
chr4 (191-227)||(5895194-5895230)
[»] chr8 (1 HSPs)
chr8 (44-230)||(1483221-1483407)


Alignment Details
Target: chr4 (Bit Score: 269; Significance: 1e-150; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 273
Target Start/End: Complemental strand, 5565195 - 5564923
Alignment:
Q  1 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatag 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  5565195 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcattcccagactactcactaagtgaatctcttcatagcattatag 5565096  T
Q  101 tgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5565095 tgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacact 5564996  T
Q  201 tccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacaggtccaatg 273  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5564995 tccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacaggtccaatg 5564923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 249
Target Start/End: Complemental strand, 5858459 - 5858211
Alignment:
Q  1 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatag 100  Q
    ||||||| |||||||||||| ||||||||||  |  ||| | ||||||| ||||||||||||| |||||||||||||||||||||||||||| |||| ||    
T  5858459 cagattggaacattgtctgtgattgacttattttccaacgaaaatctccgtggttcatttccaaactactcactaagtgaatctcttcatagaattagag 5858360  T
Q  101 tgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacact 200  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||| |||||||| |||||| |||||||||||||   |||||||||||||||||| ||    
T  5858359 tgagtgacacaaacttctctggaccattacctagctctattggcaacttgaggcagttatctgaattggatctttctttttgtcaatttaatggaaccct 5858260  T
Q  201 tccaaattcattgtcaaacctcacacacctcagttacttggatttgtca 249  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5858259 tccaaattcattgtcaaacctcacacacctcagttacttggatctgtca 5858211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 58 - 273
Target Start/End: Complemental strand, 5605455 - 5605240
Alignment:
Q  58 tttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcact 157  Q
    ||||||||||||||||| |||||||||||||| |||||||| | |||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  5605455 tttccagactactcacttagtgaatctcttcacagcattatggcgagtaacacaagcttctctggagcattacctagctctattggcaacttgaggcact 5605356  T
Q  158 tatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatag 257  Q
    ||||| ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||  |||||||||||||||| ||||     
T  5605355 tatctgaattgtatctttccagttgtcaatttaatggaacactttccaattcattgtcaaacctcacacaactcagggacttggatttgtcaaataataa 5605256  T
Q  258 tttcacaggtccaatg 273  Q
    ||||||||||||||||    
T  5605255 tttcacaggtccaatg 5605240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 43 - 240
Target Start/End: Complemental strand, 3749305 - 3749108
Alignment:
Q  43 aatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattg 142  Q
    ||||||||||| |  |||||| |||||||| | |||||||||||||| |  |||| ||| ||| |||||||||||| |||||||||||||| |  |||||    
T  3749305 aatctccatggcttttttccacactactcaatgagtgaatctcttcaaataattagagtaagtaacacaaacttctatggagcattacctaacattattg 3749206  T
Q  143 gcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttg 240  Q
    | ||  ||||  | |||||||  |||||||||||   ||||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||    
T  3749205 gaaacctgagaaaattatctactttggatctttctttttgtcaattcaatggaacacttccaaattcattgtcaaacctcacacaactgagttacttg 3749108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 4 - 221
Target Start/End: Original strand, 5570938 - 5571155
Alignment:
Q  4 attgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtga 103  Q
    |||| |||||||||  ||||||| |||||||| |||||||||||||||||||||||||| || |   | || |||| |||||| |||| | | |  || |    
T  5570938 attggaacattgtcatttattgatttatcattcaactacaatctccatggttcatttccggaatttccgctgagtggatctctccataccttaagggtaa 5571037  T
Q  104 gttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttcc 203  Q
    || |||||| ||| ||||||||||| ||    |||||||| ||  ||||||| |||||| ||||||||||||  | |||| |||||||||||||||||||    
T  5571038 gtaacacaagcttttctggagcatttccatattctattggtaacatgaggcatttatctgaattggatcttttaaattgtaaatttaatggaacacttcc 5571137  T
Q  204 aaattcattgtcaaacct 221  Q
     |||||| ||||||||||    
T  5571138 caattcactgtcaaacct 5571155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 5852818 - 5853086
Alignment:
Q  1 cagattgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccagactactca-ctaagtgaatctcttcatagcattata 99  Q
    ||||||| |||| |||||||||||||| || |||  |||  ||||||||||||||||||||||||  | ||| || |||| |||||| || | | | |      
T  5852818 cagattggaacactgtctgttattgacataacatacaacagcaatctccatggttcatttccagaa-attcagctgagtggatctctccagaccttaagg 5852916  T
Q  100 gtgagttacacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacac 199  Q
    || |||| ||||||||| ||||||||| | ||   |   ||||| ||  |||||||||||| | ||||||||||||| | || |||||||||||||||||    
T  5852917 gtaagtttcacaaacttttctggagcaattccacacatcattggtaagatgaggcacttatatgaattggatctttctaattctcaatttaatggaacac 5853016  T
Q  200 ttccaaattcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacaggtcc 269  Q
    |||| |||||||| |||||||| ||| | || ||||||||||||||||||   || ||||||||||||||    
T  5853017 ttcccaattcattttcaaacctaacagaactaagttacttggatttgtcatttaacagtttcacaggtcc 5853086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 107 - 273
Target Start/End: Original strand, 5583248 - 5583414
Alignment:
Q  107 acacaaacttctctggagcattacctagctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaa 206  Q
    |||||| ||||||||||||||| ||   ||||||||| ||  || |||| |||||| ||||||||||||| | |||| || ||||||||||||||||       
T  5583248 acacaagcttctctggagcatttccatactctattggtaacatggggcatttatctgaattggatctttcgaattgtgaacttaatggaacacttccctt 5583347  T
Q  207 ttcattgtcaaacctcacacacctcagttacttggatttgtcaaacaatagtttcacaggtccaatg 273  Q
    |||| |||||||||||||| | || || ||| |||||||||||   |||||||||||||||| ||||    
T  5583348 ttcactgtcaaacctcacaaaactgagatacatggatttgtcatctaatagtttcacaggtcaaatg 5583414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 134 - 225
Target Start/End: Original strand, 252282 - 252373
Alignment:
Q  134 gctctattggcaaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcaca 225  Q
    ||||||||||||| ||||||||||||||| |||| || |||||    |||||||||||||| |||||||| |||||||||||||||||||||    
T  252282 gctctattggcaacttgaggcacttatctgaattagacctttctcactgtcaatttaatggtacacttcccaattcattgtcaaacctcaca 252373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 149 - 269
Target Start/End: Complemental strand, 5553456 - 5553338
Alignment:
Q  149 tgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacctcagttacttggatttgtc 248  Q
    |||||||||||| ||  ||||||||||| | || ||||| ||||||||||||||| |||||||| |||||||| ||| | || |||||||||||||||||    
T  5553456 tgaggcacttatata--ttggatctttctaattctcaatataatggaacacttcccaattcattttcaaacctaacagaactaagttacttggatttgtc 5553359  T
Q  249 aaacaatagtttcacaggtcc 269  Q
    |   || ||||||||||||||    
T  5553358 atttaacagtttcacaggtcc 5553338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 58 - 123
Target Start/End: Original strand, 5895061 - 5895126
Alignment:
Q  58 tttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctgga 123  Q
    ||||||||||||||||| |||||||||||||||||||||||| || || |||||| ||||||||||    
T  5895061 tttccagactactcacttagtgaatctcttcatagcattatattgcgtaacacaagcttctctgga 5895126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 42 - 128
Target Start/End: Original strand, 5886200 - 5886286
Alignment:
Q  42 caatctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcatt 128  Q
    ||||||||||| ||  || || || |||||||| ||||||| |||||||||||||| ||||||| |||||| |||||||||||||||    
T  5886200 caatctccatgtttttttccctgattactcacttagtgaatatcttcatagcattagagtgagtaacacaagcttctctggagcatt 5886286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 46 - 99
Target Start/End: Original strand, 5847985 - 5848038
Alignment:
Q  46 ctccatggttcatttccagactactcactaagtgaatctcttcatagcattata 99  Q
    ||||||||||  ||||||||| ||||||| ||||||||||||||||||||||||    
T  5847985 ctccatggtttttttccagaccactcacttagtgaatctcttcatagcattata 5848038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 5539220 - 5539292
Alignment:
Q  149 tgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacct 221  Q
    |||||||||||||| ||||||||||||| | | |  | |||||||||| |||||| |||||||||||||||||    
T  5539220 tgaggcacttatctgaattggatctttctaatagcaattttaatggaatacttcccaattcattgtcaaacct 5539292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 65
Target Start/End: Complemental strand, 5559401 - 5559340
Alignment:
Q  4 attgaaacattgtctgttattgacttatcatttaactacaatctccatggttcatttccaga 65  Q
    |||| |||||||||  ||||||||||| |||| ||| | ||||||||| |||||||||||||    
T  5559401 attggaacattgtcatttattgacttaacattaaacaaaaatctccatagttcatttccaga 5559340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 5583161 - 5583197
Alignment:
Q  20 ttattgacttatcatttaactacaatctccatggttc 56  Q
    ||||||||||||| || ||||||||||||||||||||    
T  5583161 ttattgacttatccttcaactacaatctccatggttc 5583197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 227
Target Start/End: Original strand, 5895194 - 5895230
Alignment:
Q  191 atggaacacttccaaattcattgtcaaacctcacaca 227  Q
    ||||||||||||| |||||| ||||||||||||||||    
T  5895194 atggaacacttcccaattcactgtcaaacctcacaca 5895230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 44 - 230
Target Start/End: Complemental strand, 1483407 - 1483221
Alignment:
Q  44 atctccatggttcatttccagactactcactaagtgaatctcttcatagcattatagtgagttacacaaacttctctggagcattacctagctctattgg 143  Q
    |||| ||||||||||||||| |||||||||| ||||||||||||| ||| |||| ||| ||||||||||  || || |||| |||||| | |||||||||    
T  1483407 atcttcatggttcatttccaaactactcacttagtgaatctcttcgtagaattagagttagttacacaagtttatcaggagaattaccaaactctattgg 1483308  T
Q  144 caaattgaggcacttatctaaattggatctttccagttgtcaatttaatggaacacttccaaattcattgtcaaacctcacacacct 230  Q
    |||||||||| |||||||| ||||||||||| |    ||||||||||||||||||||||| |||||| |||| ||||||||||||||    
T  1483307 caaattgaggtacttatctgaattggatcttccttactgtcaatttaatggaacacttcccaattcaatgtccaacctcacacacct 1483221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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