View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7839_low_33 (Length: 276)

Name: NF7839_low_33
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7839_low_33
NF7839_low_33
[»] chr8 (4 HSPs)
chr8 (1-255)||(35991981-35992234)
chr8 (100-255)||(35995523-35995670)
chr8 (1-105)||(35996906-35997014)
chr8 (44-113)||(29133342-29133412)
[»] scaffold0489 (2 HSPs)
scaffold0489 (100-255)||(108-255)
scaffold0489 (1-105)||(1492-1600)


Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 35992234 - 35991981
Alignment:
Q  1 ttaaatcggtggtaaaataaattttgagtgaggaattcaacctgattttgagcgatttaactagtggtgaaatcggtaatattgagttaatttatttcga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35992234 ttaaatcggtggtaaaataaattt-gagtgaggaattcaacctgattttgagcgatttaactagtggtgaaatcggtaatattgagttaatttatttcga 35992136  T
Q  101 ttttactcaatttcacccaaattgtcatttaaaatttgaaagcatatttcttgtgaaatcaagaagaggagtttgaaagttcaactactattttaaagga 200  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35992135 ttttactcgatttcacccaaattgtcatttaaaatttgaaagcatatttcttgtgaaatcaagaagaggagtttgaaagttcaactattattttaaagga 35992036  T
Q  201 attgaccacatgttaaggccagcccaacatatatacgtggagactcaaagctaac 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35992035 attgaccacatgttaaggccagcccaacatatatacgtggagactcaaagctaac 35991981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 35995670 - 35995523
Alignment:
Q  100 attttactcaatttcacccaaattgtcatttaaaatttgaaagcatatttcttgtgaaatcaagaagaggagtttgaaagttcaactactattttaaagg 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||   ||||| |||||    
T  35995670 attttactcgatttcacccaaattgtcatttaaaatttgaaagcatatt----gtgaaatcaagaagaggagtttgaaagttcaaccgatatttaaaagg 35995575  T
Q  200 aattgaccacatgttaaggccagcccaacatatatacgtggagactcaaagctaac 255  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  35995574 aattgaccacatgttaaggccagcccaac----atacgtggagactcaaagctaac 35995523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 35997014 - 35996906
Alignment:
Q  1 ttaaatcggtggtaaaataaattttgagtga----ggaattcaacctgattttgagcgatttaactagtggtgaaatcggtaatattgagttaatttatt 96  Q
    ||||||||||| |||||||| ||| ||||||    ||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||    
T  35997014 ttaaatcggtgataaaataagtttagagtgaaatcggaattcaacccgattttgagtgatttaacttgtggcgaaatcggtaaaattgagttaatttatt 35996915  T
Q  97 tcgatttta 105  Q
    |||||||||    
T  35996914 tcgatttta 35996906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 44 - 113
Target Start/End: Complemental strand, 29133412 - 29133342
Alignment:
Q  44 gattttgagcgatttaactagtggtgaaatcg-gtaatattgagttaatttatttcgattttactcaattt 113  Q
    |||||||||  |||| ||| |||||||||||| |||| ||||||||||||||||| |||||||||||||||    
T  29133412 gattttgagtcatttcactcgtggtgaaatcgtgtaaaattgagttaatttattttgattttactcaattt 29133342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: scaffold0489
Description:

Target: scaffold0489; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 100 - 255
Target Start/End: Complemental strand, 255 - 108
Alignment:
Q  100 attttactcaatttcacccaaattgtcatttaaaatttgaaagcatatttcttgtgaaatcaagaagaggagtttgaaagttcaactactattttaaagg 199  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||   ||||| |||||    
T  255 attttactcgatttcacccaaattgtcatttaaaatttgaaagcatatt----gtgaaatcaagaagaggagtttgaaagttcaaccgatatttaaaagg 160  T
Q  200 aattgaccacatgttaaggccagcccaacatatatacgtggagactcaaagctaac 255  Q
    |||||||||||||||||||||||||||||    |||||||||||||||||||||||    
T  159 aattgaccacatgttaaggccagcccaac----atacgtggagactcaaagctaac 108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0489; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 1600 - 1492
Alignment:
Q  1 ttaaatcggtggtaaaataaattttgagtga----ggaattcaacctgattttgagcgatttaactagtggtgaaatcggtaatattgagttaatttatt 96  Q
    ||||||||||| |||||||| ||| ||||||    ||||||||||| ||||||||| ||||||||| |||| ||||||||||| ||||||||||||||||    
T  1600 ttaaatcggtgataaaataagtttagagtgaaatcggaattcaacccgattttgagtgatttaacttgtggcgaaatcggtaaaattgagttaatttatt 1501  T
Q  97 tcgatttta 105  Q
    |||||||||    
T  1500 tcgatttta 1492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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