View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7839_low_39 (Length: 239)
Name: NF7839_low_39
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_39 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 39299629 - 39299407
Alignment:
| Q |
1 |
caaaagcttccgaaacaagcccccgacgacaataagcattaaccaaagtattataagtcacaagatcagcataaacccctttctcctccatctcagacaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299629 |
caaaagcttccgaaacaagcccccgacgacaataagcattaaccaaagtattataagtcacaagatcagcataaacccctttctcctccatctcagacaa |
39299530 |
T |
|
| Q |
101 |
ataaaccccaacattatccaatttcccatctttacacaaagcattaaccataatattcaaagtataaacattaacaatattcccacttttaacaaaatcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39299529 |
ataaaccccaacattatccaatttcccatctttacacaaagcattaaccataatattcaaagtataaacattaacaatattcccacttttaacaaaatcc |
39299430 |
T |
|
| Q |
201 |
tcataaaccttccaagctaaatc |
223 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
39299429 |
tcataaaccttccaagctaaatc |
39299407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 31 - 108
Target Start/End: Original strand, 39081397 - 39081474
Alignment:
| Q |
31 |
aataagcattaaccaaagtattataagtcacaagatcagcataaacccctttctcctccatctcagacaaataaaccc |
108 |
Q |
| |
|
|||||||||||| || |||||||||||| || ||||||||||||| ||||| |||||||||||||||||||||||| |
|
|
| T |
39081397 |
aataagcattaatcacagtattataagtaacgagatcagcataaaaaccttttgcctccatctcagacaaataaaccc |
39081474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University