View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_4 (Length: 613)
Name: NF7839_low_4
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 1 - 594
Target Start/End: Complemental strand, 42688617 - 42688024
Alignment:
| Q |
1 |
gatatgctattgctaaaaataattgagattacaatgagagcgtggatactaacaactaaatatgaaaagagtaatttacatgagcagggtccaaaactag |
100 |
Q |
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| T |
42688617 |
gatatgctattgctaaaaataattgagattacaatgagagcgtggatactaacaactaaatatgaaaagagtaatttacatgagcagggtccaaaactag |
42688518 |
T |
|
| Q |
101 |
gagattatatggtagaattccattctgttgatgtttggcttgaactccaactattgttctcgagtgaccatcatgttgaaagtacaagggcctgtccaac |
200 |
Q |
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| T |
42688517 |
gagattatatggtagaattccattctgttgatgtttggcttgaactccaactattgttctcgagtgaccatcatgttgaaagtacaagggcctgtccaac |
42688418 |
T |
|
| Q |
201 |
aaagctttcaaagtttaaacaataagaaccaaaattgttgatgtggttagccatgtgtatccaaaatgttccctcacgttttctcgcaaatcacaacatg |
300 |
Q |
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| T |
42688417 |
aaagctttcaaagtttaaacaataagaaacaaaattgttgatgtggttagccatgtgtatctaaaatgttccctcacgttttctcgcaaatcacaacatg |
42688318 |
T |
|
| Q |
301 |
ctgctgaccaaattggattgagttttcatcagaaaagtaattccacacaaaatccatgagaacttgataagcctcacttttaactttactgtttgccatc |
400 |
Q |
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| T |
42688317 |
ctgctgaccaaattggattgagttttcatcagaaaagtaattccacacaaaatccatgagaacttgataagcctcacttttaactttactgtttgccatc |
42688218 |
T |
|
| Q |
401 |
ttatcatttcttgttttgtccacagtgttatcaacacttgttcctacgacagattgggattccttaggaccgaaatccactattcttgcccgaagagcaa |
500 |
Q |
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| T |
42688217 |
ttatcatttcttgttttgtccacagtgttatcaacacttattcctacgacagattgggattccttaggaccgaaatccactattcttgcccgaagagcaa |
42688118 |
T |
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| Q |
501 |
aagaacgcaagagagcagaacactcagtagttcctatccattgttttgaaccgtaaacagcatgatccaattgagcagctcctggggcatcaaa |
594 |
Q |
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| T |
42688117 |
aagaacgcaagagagcagaacactcagtagttcctatccatttttttgaaccgtaaacagcatgatccaattgagcagctcctggggcatcaaa |
42688024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 5e-33; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 76 - 212
Target Start/End: Complemental strand, 29116601 - 29116465
Alignment:
| Q |
76 |
ttacatgagcagggtccaaaactaggagattatatggtagaattccattctgttgatgtttggcttgaactccaactattgttctcgagtgaccatcatg |
175 |
Q |
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| T |
29116601 |
ttacatgaccaggatcaagaactaggagattataatgcagaattccatttcgttgatgtctgacttggattccaactattgttctcgagtgtccatcatg |
29116502 |
T |
|
| Q |
176 |
ttgaaagtacaagggcctgtccaacaaagctttcaaa |
212 |
Q |
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| T |
29116501 |
ttgaaagtacaagggactgtccaagaaagctttcaaa |
29116465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 458 - 542
Target Start/End: Complemental strand, 29116040 - 29115956
Alignment:
| Q |
458 |
gattccttaggaccgaaatccactattcttgcccgaagagcaaaagaacgcaagagagcagaacactcagtagttcctatccatt |
542 |
Q |
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| T |
29116040 |
gattccttaggaccgaaatccactacccttgatcggagaccaaaagaacgcaaaagggcagcacattcagtagctcctatccatt |
29115956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 29116355 - 29116295
Alignment:
| Q |
308 |
ccaaattggattgagttttcatcagaaaagtaattccacacaaaatccatgagaacttgat |
368 |
Q |
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| T |
29116355 |
ccaaattgaatcgagtttttatttgaaaaataattccacacaaagtccatgagaacttgat |
29116295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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