View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_42 (Length: 223)
Name: NF7839_low_42
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37904763 - 37904969
Alignment:
| Q |
1 |
caccgtccaacctgaacatagcagctattttagaatagggaatatattatacatagcatacatatctaaggtgttggaatttggaaaaacctgacaaggg |
100 |
Q |
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| T |
37904763 |
caccgtccaacctgaacatagcatctattttagaatagggaatatattatacatagcatacatatctaaggtgttggaatttggaaaaacctgacaaggg |
37904862 |
T |
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| Q |
101 |
tcttaatgttggtattttcatgggcaaggctggttattgcgtcggctgctctcctaagaagaccagaaaaaagtgcttgagaaattacagggcttttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37904863 |
tcttaatgttggtattttcatgggcaaggctggttattgcatcggctgctctcctaagaagaccagaaaaaagtgcttgagaaattacagggcttttggg |
37904962 |
T |
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| Q |
201 |
tctcttt |
207 |
Q |
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||||||| |
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| T |
37904963 |
tctcttt |
37904969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 207
Target Start/End: Original strand, 37911274 - 37911480
Alignment:
| Q |
1 |
caccgtccaacctgaacatagcagctattttagaatagggaatatattatacatagcatacatatctaaggtgttggaatttggaaaaacctgacaaggg |
100 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911274 |
caccgtccaacctgaacatagcatctattttagaatagggaatatattatacatagcatacatatctaaggtgttggaatttggaaaaacctgacaaggg |
37911373 |
T |
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| Q |
101 |
tcttaatgttggtattttcatgggcaaggctggttattgcgtcggctgctctcctaagaagaccagaaaaaagtgcttgagaaattacagggcttttggg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37911374 |
tcttaatgttggtattttcatgggcaaggctggttattgcatcggctgctctcctaagaagaccagaaaaaagtgcttgagaaattacagggcttttggg |
37911473 |
T |
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| Q |
201 |
tctcttt |
207 |
Q |
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||||||| |
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| T |
37911474 |
tctcttt |
37911480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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