View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_48 (Length: 203)
Name: NF7839_low_48
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_48 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 29007693 - 29007491
Alignment:
| Q |
1 |
acacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgat |
100 |
Q |
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| T |
29007693 |
acacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgat |
29007594 |
T |
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| Q |
101 |
ccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29007593 |
ccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaac |
29007494 |
T |
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| Q |
201 |
aac |
203 |
Q |
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||| |
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| T |
29007493 |
aac |
29007491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 139; E-Value: 6e-73
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 21409526 - 21409728
Alignment:
| Q |
1 |
acacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgat |
100 |
Q |
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|||||||||| |||||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||| ||| ||||| | |||||||||||||| |
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| T |
21409526 |
acacaccgttgtacgacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaatgccatttcgacatacaactcaggagaaacagtgat |
21409625 |
T |
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| Q |
101 |
ccacctcactgaatcaggaacacgctacttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaac |
200 |
Q |
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| T |
21409626 |
ccacgtcattgaatcaggaaaacgctacttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaac |
21409725 |
T |
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| Q |
201 |
aac |
203 |
Q |
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||| |
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| T |
21409726 |
aac |
21409728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 21461815 - 21461926
Alignment:
| Q |
1 |
acacaccgttatacgacgtgatcgaggtaaaccaacaaggctacaacacatgtacaatagcaaatgccatttccacacacaacactggagaaacagtgat |
100 |
Q |
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|||||||||| ||| |||| || ||||||||||||||||| ||||||||||||||||||||||| ||| |||| ||| ||||| ||||||||| |||||| |
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| T |
21461815 |
acacaccgttgtacaacgtaattgaggtaaaccaacaagggtacaacacatgtacaatagcaaacgccgtttcgacatacaactctggagaaatagtgat |
21461914 |
T |
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| Q |
101 |
ccacctcactga |
112 |
Q |
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|||||||||||| |
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| T |
21461915 |
ccacctcactga |
21461926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 128 - 203
Target Start/End: Original strand, 21465429 - 21465504
Alignment:
| Q |
128 |
cttcgtttgtggcagaatgggtcattgtcaacaaggcctcaaacttgaagtcaaagttcaagctcagtccaacaac |
203 |
Q |
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||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||||||||||||||| |
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| T |
21465429 |
cttcgtttgtggcagaatgggccattgccaacaaggcctgaaactcaaagtcaaagttcaagctcagtccaacaac |
21465504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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