View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_6 (Length: 583)
Name: NF7839_low_6
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_6 |
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| [»] scaffold0007 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 131 - 571
Target Start/End: Original strand, 365019 - 365446
Alignment:
| Q |
131 |
cttctacggagaagtctgccaaaagctcagacttaaccttgaatggcgtccgagcttgcccaaatattcacacataagttgcttttctaattacatgttg |
230 |
Q |
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| T |
365019 |
cttctacggagaagtctgccaaaagctcagacttaatcttgaatggcatccgagcttgcccaaatattcacacataagttgtttttctaattacatgttg |
365118 |
T |
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| Q |
231 |
gaaatattaagaatttgctcatttaaattaaaaatctccaccaacaaatgtgagtgctgcatatggcaacaaagatgaatggattctaaaaaacctatct |
330 |
Q |
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| T |
365119 |
gaaatattaagaatttgctcatttaaattaaaaatcttcaccaacaaatgtgagtgctgcatatggcaacgaagatgaatggattctaaaaaacctatct |
365218 |
T |
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| Q |
331 |
cacaaataacattttgaatagaattgttgattaccaacattcactcatcatacacttcaaatagctcggcaaaaatcatagcatttaacgatatacaact |
430 |
Q |
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| T |
365219 |
cacaaataacattttgaatagaattgttgattaccaacatt-----------cacttcaaatagctcggcaaaaatcatagcatttaacgatatacaact |
365307 |
T |
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| Q |
431 |
actattttttcataatgaattaacgataattttataccgtaaatattttgtagttatagtgatcatcctgtttctttacctctctctttatacacacaca |
530 |
Q |
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| T |
365308 |
actattttttcataatgaattaacgataattttataccataaatattttgtagttatagtgatcattccgtctctttacctctctctttat--acacaca |
365405 |
T |
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| Q |
531 |
catgtgtgcgcgcgcgcataaccaagatccgttaacaccaa |
571 |
Q |
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| T |
365406 |
catgtgtgtgtgcgcgcataaccaagatccgttaacaccaa |
365446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 327 - 370
Target Start/End: Original strand, 24183513 - 24183556
Alignment:
| Q |
327 |
atctcacaaataacattttgaatagaattgttgattaccaacat |
370 |
Q |
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| T |
24183513 |
atctcacaaataacctgttgaatagagttgttgattaccaacat |
24183556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0007 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0007
Description:
Target: scaffold0007; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 328 - 368
Target Start/End: Complemental strand, 243918 - 243878
Alignment:
| Q |
328 |
tctcacaaataacattttgaatagaattgttgattaccaac |
368 |
Q |
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| T |
243918 |
tctcgcaaataactttttgaatagagttgttgattaccaac |
243878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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