View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_7 (Length: 561)
Name: NF7839_low_7
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 47 - 393
Target Start/End: Complemental strand, 36564674 - 36564323
Alignment:
| Q |
47 |
cttatgtgattggcttagttaagaaagaaaggttatgggaagggtgtgagggtagacccttcttcataagataaaaa-cacaaattataccactnnnnnn |
145 |
Q |
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| T |
36564674 |
cttatgtgattggcttagttaagaaagaaaggttatgggaagggtgtgagggtagaccgt-cttcataagataaaaaacacatattataccactaaaaaa |
36564576 |
T |
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| Q |
146 |
nnt-tatgaaaattttgtgcaagtacatgccctcacaccactctacatacatccgtccttaaattgaagtagcactaatgtctattttacaaccgcttct |
244 |
Q |
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| T |
36564575 |
aaaatatgaaaattttgtgcaagtacatgctctcacaccactctacatacatccgtccctgaattgaagtagcactaatgtctattttacaaccgcttct |
36564476 |
T |
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| Q |
245 |
aaaggatggaactcaacaccttaagattataaggcttgaccttatccacttagctagcacctcaagtacgtactcacttgataatcacttaagaaaa--- |
341 |
Q |
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| T |
36564475 |
aaaggatggaactcaacaccttaagattataaggcttgaccttatccacttagctagcacttcaagtacgtactcacttgataatcactcaaaaaaaaac |
36564376 |
T |
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| Q |
342 |
caaagagaaaaaacttttgatcattctatcgata-aaatctaactatccaaaa |
393 |
Q |
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| T |
36564375 |
aaaagagaaaaaaaatttgatcattcaatctatagaaatctaactatccaaaa |
36564323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 423 - 458
Target Start/End: Complemental strand, 36564313 - 36564278
Alignment:
| Q |
423 |
tcatcattttgtatatcctacatacgtctcattacc |
458 |
Q |
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| T |
36564313 |
tcatcattttgtatatcctacatacgtctcattacc |
36564278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 51 - 127
Target Start/End: Complemental strand, 2473323 - 2473243
Alignment:
| Q |
51 |
tgtgattggcttagttaagaaagaaaggtt----atgggaagggtgtgagggtagacccttcttcataagataaaaacaca |
127 |
Q |
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| T |
2473323 |
tgtgattggctaagttaagaaagaaagcttcaccatgtgaagggtgtgagggaagacccttcttcatagtataaaaacaca |
2473243 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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