View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_8 (Length: 543)
Name: NF7839_low_8
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 543
Target Start/End: Original strand, 8829385 - 8829902
Alignment:
| Q |
20 |
tccccctccactgtcttgagaaagtgttgcttgtattgtgaacaacatgatgaattgaattggaaaacttattatgacttcctctcatactatttatagt |
119 |
Q |
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| T |
8829385 |
tccccctccactgtcttgagaaagtgttgcttgtattgtgaacaacatgatgaattgaattggaaaact------gacttcctctcatactatttatagt |
8829478 |
T |
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| Q |
120 |
ttatattaaactaattgctgcatggttaaaagactccacagatgccattatgttgataccagactctcatggtaaacatgtagatccaagttccaactca |
219 |
Q |
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| T |
8829479 |
ttatattaaactaattgctgcatggttaaaagactccacagatgccattatgttgataccagactctcatggtaaacatgtagatccaagttccaactca |
8829578 |
T |
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| Q |
220 |
agtttgcctaaaatcctaggataatctatcaagcattccattatttgcatcatattgagctaagttggaatacaattttttctacgaaaacaacaacatt |
319 |
Q |
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| T |
8829579 |
agtttgcctaaaatcctaggataatctatcaagcattccattatttgcatcatattgagctaaattggaatacaattttttctacgaaaacaacaacatt |
8829678 |
T |
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| Q |
320 |
atccgaaacgcaaaagggtttaaatgaaggctgcaatcaaggattccagagcattatccgttaatgaacattatttagaatttcaaaccaacttgatcat |
419 |
Q |
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| T |
8829679 |
atccgaaacgcaaaagggtttaaatgaaggctgcaatcaaggattccagagcattatccgttaatgaacattatttagaatttcaaaccaacttgatcat |
8829778 |
T |
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| Q |
420 |
cgattgagtatttttctttcaatgagccaaatcaaaaaattaataggagaaaaagttacacttgagtacaaacactgcacaaaatgagctactaataacc |
519 |
Q |
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| T |
8829779 |
cgattgagtatttttctttcaatgagccaagtcaaaaaattaataggagaaaaagttgcacttgagaacaaacactgcacaagatgagctactaataact |
8829878 |
T |
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| Q |
520 |
gtggcctcaacaaaaatctgattt |
543 |
Q |
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| T |
8829879 |
gtggcatcaacaaaaatctgattt |
8829902 |
T |
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Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 446 - 517
Target Start/End: Original strand, 45569459 - 45569531
Alignment:
| Q |
446 |
ccaaatcaaaaaattaataggagaaaaag-ttacacttgagtacaaacactgcacaaaatgagctactaataa |
517 |
Q |
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| T |
45569459 |
ccaaagcaaaaacttaataggagaaaaaggttacacttgagtacaagcagtgcacaagatgagctactaataa |
45569531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 436 - 517
Target Start/End: Original strand, 19566179 - 19566259
Alignment:
| Q |
436 |
tttcaatgagccaaatcaaaaaattaataggagaaaaagttacacttgagtacaaacactgcacaaaatgagctactaataa |
517 |
Q |
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| T |
19566179 |
tttcaataagccaaatcaaata-ttaataggagaaaaagttacactagagcacaagcattgcacaagatgagctacaaataa |
19566259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 42416291 - 42416233
Alignment:
| Q |
459 |
ttaataggagaaaaagttacacttgagtacaaacactgcacaaaatgagctactaataa |
517 |
Q |
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| T |
42416291 |
ttaataggagaaaaagtgacacttaaatacaagcagtgcacaagatgagctactaataa |
42416233 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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