View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7839_low_9 (Length: 529)
Name: NF7839_low_9
Description: NF7839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7839_low_9 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 11 - 529
Target Start/End: Original strand, 41024849 - 41025365
Alignment:
| Q |
11 |
aagaatatcagcaagttgcttgtacttctcttttagcacatcaatctgagacttggccttctctaaaagctctatccaaatgtcaaaaatcacattaaca |
110 |
Q |
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| T |
41024849 |
aagaatatcagcaagttgcttgtacttctcttttagcacatcaatctgagacttggccttctctaaaagctctatccaaatgtcaaaaatcacattaaca |
41024948 |
T |
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| Q |
111 |
tcgattaatnnnnnnncaaacatgaaaacatatacttatggcccgtttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgattt |
210 |
Q |
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| T |
41024949 |
tcaaaaaa--------caaacatgaaaacatatacttatggcccgtttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgattt |
41025040 |
T |
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| Q |
211 |
ttacgaaaacttgttaaaaaacacttgaagctatttcaaactacttctttataaattaaaagagtaattttgattcattgttggaaatttaacctaacaa |
310 |
Q |
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| T |
41025041 |
ttacgaaaacttgttaaaaaacacttgaagctatttcaaactacttctttataaattaaaagagtaattttgattcattgttggaaatttaacctaacaa |
41025140 |
T |
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| Q |
311 |
aatcacnnnnnnnngcaaaaagata------gaaaatgacttagcttctcattttaagcatttttccccttgaatcaataagcaatgcattgaacatgaa |
404 |
Q |
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| T |
41025141 |
gatcacttttttttgcaaaaagatatttctagaaaatgacttagcttctcattttaagcatttttccccttgaatcaataagcaatgcattgaacatgaa |
41025240 |
T |
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| Q |
405 |
cgaaattgattatctacactgagcagaaaaatgtaattgcttaaattagggtttaaggaagaagaatgagagggagttggttacctggagtaggacgaga |
504 |
Q |
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| T |
41025241 |
cgaaattgattatctacactgagcagaaaaatgtaattgcttaaattagggtttaaggaagaagaatgagagggagttggttacctggagtaggacgaga |
41025340 |
T |
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| Q |
505 |
gtgatgaacaagaagaatgctagca |
529 |
Q |
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| T |
41025341 |
gtgatgaacaagaagaatgctagca |
41025365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 156 - 283
Target Start/End: Complemental strand, 30389849 - 30389728
Alignment:
| Q |
156 |
tttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgatttttacgaaaacttgttaaaaaacacttgaagctatttcaaactact |
255 |
Q |
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| T |
30389849 |
tttgttatagattaaaaaaa--gtgatttttactttatatttttaaatctgatttttatgaaaactt----aaaaatagtagaagctattttgaactcat |
30389756 |
T |
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| Q |
256 |
tctttataaattaaaagagtaattttga |
283 |
Q |
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| T |
30389755 |
ttgttataaattaaaagagtaattttga |
30389728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 150 - 283
Target Start/End: Complemental strand, 36746543 - 36746413
Alignment:
| Q |
150 |
ggcccgtttgttatagattaaaaaagatgtgattttcacttt-atatttctaaaaatgatttttacgaaaacttgttaaaaaacacttgaagctatttca |
248 |
Q |
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| T |
36746543 |
ggcccatttgttatagattaaaaaag---tgatttttacttttatattgttaaaaatgatttt-atgaaaacttgctaaaaaatggtggaagctatttcg |
36746448 |
T |
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| Q |
249 |
aactacttctttataaattaaaagagtaattttga |
283 |
Q |
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| T |
36746447 |
aacttatttgttataaattaaaagaataactttga |
36746413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 155 - 231
Target Start/End: Original strand, 2536919 - 2536994
Alignment:
| Q |
155 |
gtttgttatagattaaaaaagatgtgattttcactttatatttctaaaaatgatttttacgaaaacttgttaaaaaa |
231 |
Q |
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| T |
2536919 |
gtttgttatagttttaaaaaaa-gtgacttttgctttatatttctagaaatgatttttatgaaaacttcttcaaaaa |
2536994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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