View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7840_high_1 (Length: 722)
Name: NF7840_high_1
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_high_1 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 694; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 694; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Original strand, 36840667 - 36841372
Alignment:
| Q |
1 |
acaatcttgttctcacctgagcctttgctttgtcaacatcctttggaaatcccttcacagatcctgaatctatggaccgaaatacctgtatttaatactt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840667 |
acaatcttgttctcacctgagcctttgctttgtcaacatcctttggaaatcccttcacagatcctgaatctatggaccgaaatacctgtatttaatactt |
36840766 |
T |
|
| Q |
101 |
gttcataataatttttaatgatctgacctattataattgattgacaattttaaaaatatttacaccaatagtgtatgcaattaaattagtagtgtatata |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
36840767 |
gttcataataatttttaatgatctgacctattataattgattgacaattttaaaaatatttacactaatagtgtatgcaattaaattagtagtgtatata |
36840866 |
T |
|
| Q |
201 |
tacctgcacatgccaattctcaggatcagtttcttcggttacacgaacagatttatcaccatcaggaccagaagatggcttgacaatccatgaaatacga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840867 |
tacctgcacatgccaattctcaggatcagtttcttcggttacacgaacagatttatcaccatcaggaccagaagatggcttgacaatccatgaaatacga |
36840966 |
T |
|
| Q |
301 |
tctagccttagcaaagcatcatcatgccagtttgttacttttctgagcctgaagtcgcgccattttttggccttccttgatctttgttcaaagttggtca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36840967 |
tctagccttagcaaagcatcatcatgccagtttgttacttttctgagcctgaagtcgcgccattttttggccttccttgatctttgttcaaagttggtca |
36841066 |
T |
|
| Q |
401 |
atatatcatatgcagccggaccttcaattttgcaatgtaagtcatgccatggttgccttggtgcagaagagttagaatttaactgcagcatacaccatac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841067 |
atatatcatatgcagccggaccttcaattttgcaatgtaagtcatgccatggttgccttggtgcagaagagttagaatttaactgcagcatacaccatac |
36841166 |
T |
|
| Q |
501 |
aattccaacaaagtactacttatgtcaatttttatgaccatattcttttatcagctatgacagtgttgtgaagggtacataaaaaagacatatttgatta |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36841167 |
aattccaacaaagtactacttatgtcaatttttatgacgatattcttttatcagctatgacagtgttgtgaagggtacataaaaaagaaatatttgatta |
36841266 |
T |
|
| Q |
601 |
tcttcagcatttatggtaaccacttacttgaaatgtaggattatggaaatcattttgaaagactgtatcaagatcactaaaaagcctatgctcaggagta |
700 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841267 |
tcttcagcatttatggtaaccacttacttgaaatgtaggattatggaaatcattttgaaagactgtatcaagatcactaaaaagcctatgctcaggagta |
36841366 |
T |
|
| Q |
701 |
tcatat |
706 |
Q |
| |
|
|||||| |
|
|
| T |
36841367 |
tcatat |
36841372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 402 - 461
Target Start/End: Complemental strand, 53620795 - 53620736
Alignment:
| Q |
402 |
tatatcatatgcagccggaccttcaattttgcaatgtaagtcatgccatggttgccttgg |
461 |
Q |
| |
|
||||||||||||||| || ||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
53620795 |
tatatcatatgcagcaggcccttcgattttgcaatgtagatcatgccatggttgccttgg |
53620736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University