View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_high_12 (Length: 242)
Name: NF7840_high_12
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 228
Target Start/End: Complemental strand, 243959 - 243749
Alignment:
| Q |
18 |
aatcttcaacagaatcttgttctgtacccaaagtactaacnnnnnnnnnnnnctaaggctactactatgttgcagttgcaggacacatacttccaaatat |
117 |
Q |
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| T |
243959 |
aatcttcaacagaatcttgttctgtacccaaagtactaacaaaaacaaaaaactaaggctactactatgttgcagttgcaggacacatacttccaaatat |
243860 |
T |
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| Q |
118 |
aacagttccatacaccaaaatgtggccttgatataaaaactaaaccttgccttcaattaaggaagtgagggctaatcaagccagcaatctcaagcatatc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
243859 |
aacagttccatacaccaaaatgtggccttgatataaaaactaaaccttgccttcaattaaggaagtgagggctaatcaagccagcaatctcaagcatatc |
243760 |
T |
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| Q |
218 |
aacttcatctc |
228 |
Q |
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||||||||||| |
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| T |
243759 |
aacttcatctc |
243749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 107 - 162
Target Start/End: Original strand, 21206127 - 21206182
Alignment:
| Q |
107 |
cttccaaatataacagttccatacaccaaaatgtggccttgatataaaaactaaac |
162 |
Q |
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||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
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| T |
21206127 |
cttccaaatataatagttccatacaccaaaatgtggccttcatataaaaactaaac |
21206182 |
T |
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