View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_high_2 (Length: 635)
Name: NF7840_high_2
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 568; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 16 - 619
Target Start/End: Complemental strand, 8178268 - 8177665
Alignment:
| Q |
16 |
tattcacacatgaacaagtaaacaaaccaaaaagcagtgaactattcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtgga |
115 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8178268 |
tattcacacatgaacaagtaaacaaaccaaaaagcagtgaactattcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtgga |
8178169 |
T |
|
| Q |
116 |
ggccttccttccactgcccttgtcattatgtgtgttgatggcaatgctgaaactactctcacatcatttgcaaggactcttttgaagtgttctagatcaa |
215 |
Q |
| |
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|| |||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8178168 |
ggtcttccttctactggccttgtcattatgtgtgttgatggcaatgctgaaaccactctcacatcatttgcaaggactcttttgaagtgttctagatcaa |
8178069 |
T |
|
| Q |
216 |
atatgtcaccaaattcactgcaaccaaagcaaagcaatgaaaaacataaacatcgataagctaaactatgctgaactttgtatgattcattcagacaacg |
315 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8178068 |
atatgtcaccaaattcactgcaaccaaagcaaagcaatgaaaaacataaatatcaataagctaaactatgctgaactttgtatgattcattcagacaacg |
8177969 |
T |
|
| Q |
316 |
acagtgacattggtaataaattgaatgttatcacatgtgtcagtgtccaataccaaaacatgtcagacaccaaatacgccttcaatgtgaagtatcggtg |
415 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| |
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| T |
8177968 |
acagtgacatcggtaataaattgaatgttatcacatgtgtcagtgtccaataccaaaacatgtcagacaccaaatacgccttcaatgtgaaatatcagtg |
8177869 |
T |
|
| Q |
416 |
ctaaacaagactcaacatagaaaacgaaaatcatcgtaaactaagaaaaaaggacgatatttaatttattaatctatacctttcatcaccccaaataaca |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8177868 |
ctaaacaagactcaacatagaaaacgaaaatcatcgtaaactaagaaaaaaggacgatatttaatttattaatctatacctttcatcaccccaaataaca |
8177769 |
T |
|
| Q |
516 |
ttgacttgcaaaacaggaacaaccaaagcagcaccaagaatcctagcaataacaacagcatcaacaatctgattcctctgttgattcatcccaccagaaa |
615 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8177768 |
ttgacttgcaaaacaggaacaaccaaagcagcaccaagaatcctagcaataacaacagcatcaacaatctgattcctctgttgattcatcccaccagaaa |
8177669 |
T |
|
| Q |
616 |
caac |
619 |
Q |
| |
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|||| |
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| T |
8177668 |
caac |
8177665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 42936835 - 42936758
Alignment:
| Q |
492 |
tacctttcatcaccccaaataacattgacttgcaaaacaggaacaaccaaagcagcaccaagaatcctagcaataaca |
569 |
Q |
| |
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||||||||||| |||||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
42936835 |
tacctttcatctccccaaatgacatgaacttgcaaaataggaacaaccaaagcagcaccaagaatcctagcaataaca |
42936758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 492 - 569
Target Start/End: Complemental strand, 33700925 - 33700848
Alignment:
| Q |
492 |
tacctttcatcaccccaaataacattgacttgcaaaacaggaacaaccaaagcagcaccaagaatcctagcaataaca |
569 |
Q |
| |
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||||||||||| || ||||| ||||| |||||||||| || ||||||||||||||||||||||||||||||||||||| |
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| T |
33700925 |
tacctttcatctccgcaaatgacattaacttgcaaaatagaaacaaccaaagcagcaccaagaatcctagcaataaca |
33700848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 492 - 569
Target Start/End: Original strand, 33701336 - 33701413
Alignment:
| Q |
492 |
tacctttcatcaccccaaataacattgacttgcaaaacaggaacaaccaaagcagcaccaagaatcctagcaataaca |
569 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||| |||||||||||||| |||||||||||||||| ||||||| |
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| T |
33701336 |
tacctttcatctccccaaatgacattaacttgcaaaataggaacaaccaaagatgcaccaagaatcctaggaataaca |
33701413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 100; Significance: 4e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 492 - 619
Target Start/End: Complemental strand, 7747684 - 7747557
Alignment:
| Q |
492 |
tacctttcatcaccccaaataacattgacttgcaaaacaggaacaaccaaagcagcaccaagaatcctagcaataacaacagcatcaacaatctgattcc |
591 |
Q |
| |
|
||||||||||| |||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
7747684 |
tacctttcatctccccaaatgacattaacttgcaaaataggaacaaccaaagcagcaccaagaatcctagcaataacaacagcatcaacaatttgattcc |
7747585 |
T |
|
| Q |
592 |
tctgttgattcatcccaccagaaacaac |
619 |
Q |
| |
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|||| ||||||||||| ||||||||||| |
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| T |
7747584 |
tctgctgattcatccctccagaaacaac |
7747557 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 7748274 - 7748097
Alignment:
| Q |
61 |
tcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtggaggccttccttccactgcccttgtcattatgtgtgttgatggcaat |
160 |
Q |
| |
|
|||||||||| ||||||| | | |||||||||||| |||||| ||||||| ||||| ||||| ||||||| | ||||||| | |||||||||||||||| |
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|
| T |
7748274 |
tcttactcttttgagatagcgcgaacggatccaacttggagtgacatgaaggggagggcttccctccactggctttgtcatcaagtgtgttgatggcaat |
7748175 |
T |
|
| Q |
161 |
gctgaaactactctcacatcatttgcaaggactcttttgaagtgttctagatcaaatatgtcaccaaattcactgcaa |
238 |
Q |
| |
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| ||||| || | ||||||||| ||||| || | |||||||| || | ||||||||| ||| |||||||||||||| |
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| T |
7748174 |
gacgaaaccacccgcacatcattggcaagaacattcttgaagtgctcaaaatcaaatatatcagcaaattcactgcaa |
7748097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 39830282 - 39830182
Alignment:
| Q |
16 |
tattcacacatgaacaagtaaacaaaccaaaaagcagtgaactattcttactcttctgagatatcttgcacggatccaactcggagtggcatgaagtgga |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
39830282 |
tattcacacaggaacaagtaaacaaaccaaaaaacagtgaactattcttactcttctgagatatcttgcacggatccaactgggagtggcatgaagtgga |
39830183 |
T |
|
| Q |
116 |
g |
116 |
Q |
| |
|
| |
|
|
| T |
39830182 |
g |
39830182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 330 - 400
Target Start/End: Original strand, 9025613 - 9025683
Alignment:
| Q |
330 |
aataaattgaatgttatcacatgtgtcagtgtccaataccaaaacatgtcagacaccaaatacgccttcaa |
400 |
Q |
| |
|
||||| |||| ||| ||||||||| ||||||||||| |||||||| |||||||||||||| || ||||||| |
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|
| T |
9025613 |
aataatttgactgtaatcacatgtatcagtgtccaacaccaaaacgtgtcagacaccaaacacaccttcaa |
9025683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 522 - 569
Target Start/End: Complemental strand, 28346255 - 28346206
Alignment:
| Q |
522 |
tgcaaaacaggaacaaccaaagcagcac--caagaatcctagcaataaca |
569 |
Q |
| |
|
||||||| |||||||||||||||| ||| |||||||||||||||||||| |
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|
| T |
28346255 |
tgcaaaataggaacaaccaaagcatcacaccaagaatcctagcaataaca |
28346206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 540 - 569
Target Start/End: Original strand, 28346423 - 28346452
Alignment:
| Q |
540 |
aaagcagcaccaagaatcctagcaataaca |
569 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
28346423 |
aaagcagcaccaagaatcctagcaataaca |
28346452 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 337 - 385
Target Start/End: Complemental strand, 29931765 - 29931717
Alignment:
| Q |
337 |
tgaatgttatcacatgtgtcagtgtccaataccaaaacatgtcagacac |
385 |
Q |
| |
|
||||||| |||||||||||||||||| || ||| | ||||||||||||| |
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|
| T |
29931765 |
tgaatgtaatcacatgtgtcagtgtctaacaccgacacatgtcagacac |
29931717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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