View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_high_6 (Length: 391)
Name: NF7840_high_6
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 5 - 373
Target Start/End: Original strand, 45412000 - 45412368
Alignment:
| Q |
5 |
ccttttattgttttaggcatgcctgctgggcaaattcttattcttgcacaatgctgaaatgtgatggcccaaaaaggaaaatatcgtgctaatttcagcg |
104 |
Q |
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| T |
45412000 |
ccttttattgttttaggcatgcctgctgggcaaattcttattcttgcacaatgctgaaatgtgatggcccaaaaaggaaaatatcgtgctaatttcagcg |
45412099 |
T |
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| Q |
105 |
ctagtcataaatatgttttgtcctaaaatcgtttacagtaatatgttttggccaaagataatcaggccgtaagtcagaagatattattttattcatcact |
204 |
Q |
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| T |
45412100 |
ctagtcataaatatgttttgtcctaaaatcgtttacagtaatatgttttggccaaagataatcaggccgtaagtcagaagatattattttattcatcact |
45412199 |
T |
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| Q |
205 |
tgttttgtacctttttatttcgcacgctacattttatgacaaaagttcttgtcaaacaaatgttctctccttgcattttgttatgaactcatgataccac |
304 |
Q |
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| T |
45412200 |
tgttttgtacctttttatttcgcacgctacattttataaccaaagttcttgtcaaacaaatgttctctccttgcattttgttatgaactcatgataccac |
45412299 |
T |
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| Q |
305 |
tgctccttttcattatttgtttattggggaaatcattctttgtgctaggagtaaaaatgagttgaatat |
373 |
Q |
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| T |
45412300 |
tgctccttttcattatttgtttattggggaaatcattctttgtgctaggagtaaaaatgagttgaatat |
45412368 |
T |
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