View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_high_9 (Length: 327)
Name: NF7840_high_9
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 310
Target Start/End: Complemental strand, 35288836 - 35288543
Alignment:
| Q |
13 |
aatatctgaataaacaatgtttctgttctgctaattttgaaggcttttgcgccgtttgcttttgcattagattgctgcaatgaatgtcatgtggatatgg |
112 |
Q |
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| T |
35288836 |
aatatctgaataaacaatgtttctgttctgctaattttgaaggcttttgcgccgtttgcttttgcattagattgctgcaatggatgtcatgtggatatgg |
35288737 |
T |
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| Q |
113 |
tatttgaaaactaaacaaaaataaagccgcagaaatggaacaaaccttagcctgaaaaggtaaattaagctgattaaattattaattctacggtatattt |
212 |
Q |
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| T |
35288736 |
tatttgaaaactaaacaaaaataaagccgcagaaatggaacaaaccttagcctgaaaaggtaaattaagctgattaaattattaattctacggtatattt |
35288637 |
T |
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| Q |
213 |
ttgacatacnnnnnnnggaaaataatgtttgaaacatccatacacccccttttatacactttgagaaagaaagaaataaaggaagtaatgtgatatat |
310 |
Q |
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| T |
35288636 |
ttgacatgctttttttggaaaataatgtttg-aacatccatacaccccgtt---tacactttgagaaagaaagaaataatggaagtaatgtgatatat |
35288543 |
T |
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