View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7840_low_11 (Length: 270)

Name: NF7840_low_11
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7840_low_11
NF7840_low_11
[»] chr5 (2 HSPs)
chr5 (18-160)||(3651528-3651658)
chr5 (18-63)||(33030879-33030924)
[»] chr2 (3 HSPs)
chr2 (22-63)||(28770717-28770758)
chr2 (21-63)||(15903832-15903874)
chr2 (18-62)||(41586488-41586532)
[»] chr8 (1 HSPs)
chr8 (18-62)||(9054776-9054820)
[»] chr1 (2 HSPs)
chr1 (22-65)||(32736939-32736982)
chr1 (21-61)||(10997071-10997111)
[»] scaffold0016 (1 HSPs)
scaffold0016 (21-63)||(102436-102478)
[»] chr7 (2 HSPs)
chr7 (22-63)||(761287-761328)
chr7 (18-63)||(5817209-5817254)
[»] chr4 (1 HSPs)
chr4 (18-104)||(42234308-42234395)


Alignment Details
Target: chr5 (Bit Score: 67; Significance: 8e-30; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 3651658 - 3651528
Alignment:
Q  18 tgagtgacttgaaaaatgggttgaaattagagtttgttctttgtgaacaaaatctaatttcttgttacacct-ttttatcacttatttcaaacgacgtat 116  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||          |    
T  3651658 tgagtgacttgaaaaatgggtagaaattagggtttgttctttgtgaacataatctaatttcttgttacaccttttttatcactaatttc----------t 3651569  T
Q  117 tggtctgaactagagtttgagtgacttgaaaaataggtagaaat 160  Q
    ||   ||||||||||||||||||||||||||||||| |||||||    
T  3651568 tg---tgaactagagtttgagtgacttgaaaaatagatagaaat 3651528  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 33030879 - 33030924
Alignment:
Q  18 tgagtgacttgaaaaatgggttgaaattagagtttgttctttgtga 63  Q
    ||||||||||||||||||||| |||||||   ||||||||||||||    
T  33030879 tgagtgacttgaaaaatgggtagaaattatgttttgttctttgtga 33030924  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 63
Target Start/End: Original strand, 28770717 - 28770758
Alignment:
Q  22 tgacttgaaaaatgggttgaaattagagtttgttctttgtga 63  Q
    ||||||||||||||||| ||||||||||||||||||||||||    
T  28770717 tgacttgaaaaatgggtagaaattagagtttgttctttgtga 28770758  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 15903832 - 15903874
Alignment:
Q  21 gtgacttgaaaaatgggttgaaattagagtttgttctttgtga 63  Q
    |||||||||||||||||| ||||||||| ||||||||||||||    
T  15903832 gtgacttgaaaaatgggtagaaattagaatttgttctttgtga 15903874  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 41586488 - 41586532
Alignment:
Q  18 tgagtgacttgaaaaatgggttgaaattagagtttgttctttgtg 62  Q
    ||||||||||||||||| ||| ||||||| |||||||||||||||    
T  41586488 tgagtgacttgaaaaataggtagaaattaaagtttgttctttgtg 41586532  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 9054776 - 9054820
Alignment:
Q  18 tgagtgacttgaaaaatgggttgaaattagagtttgttctttgtg 62  Q
    ||||||||||||||||||||| ||||||||| |||||||||||||    
T  9054776 tgagtgacttgaaaaatgggtagaaattagattttgttctttgtg 9054820  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 22 - 65
Target Start/End: Original strand, 32736939 - 32736982
Alignment:
Q  22 tgacttgaaaaatgggttgaaattagagtttgttctttgtgaac 65  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||    
T  32736939 tgacttgaaaaatgggtagaaattagggtttgttctttatgaac 32736982  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 10997111 - 10997071
Alignment:
Q  21 gtgacttgaaaaatgggttgaaattagagtttgttctttgt 61  Q
    |||||||||||||||||| |||||||| ||||||| |||||    
T  10997111 gtgacttgaaaaatgggtagaaattagggtttgttatttgt 10997071  T

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Target: scaffold0016 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 63
Target Start/End: Original strand, 102436 - 102478
Alignment:
Q  21 gtgacttgaaaaatgggttgaaattagagtttgttctttgtga 63  Q
    |||||||||||||||||| |||||||| ||||||| |||||||    
T  102436 gtgacttgaaaaatgggtagaaattagggtttgttttttgtga 102478  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 63
Target Start/End: Complemental strand, 761328 - 761287
Alignment:
Q  22 tgacttgaaaaatgggttgaaattagagtttgttctttgtga 63  Q
    ||||||||||||||||| |||||||| |||| ||||||||||    
T  761328 tgacttgaaaaatgggtagaaattagtgttttttctttgtga 761287  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 5817209 - 5817254
Alignment:
Q  18 tgagtgacttgaaaaatgggttgaaattagagtttgttctttgtga 63  Q
    ||||||||||||||||||| | ||||||||  ||||||||||||||    
T  5817209 tgagtgacttgaaaaatggatagaaattaggttttgttctttgtga 5817254  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 104
Target Start/End: Original strand, 42234308 - 42234395
Alignment:
Q  18 tgagtgacttgaaaaatgggttgaaattagagtttgttctttgtgaaca--aaatctaatttcttgttacacctttttatcacttattt 104  Q
    ||||| |||| ||||||| || |||||||||||| |||||||||||||   | |||||||||||||| ||  |||| ||||||||||||    
T  42234308 tgagtaacttaaaaaatgagtagaaattagagtt-gttctttgtgaacttgagatctaatttcttgtaacctctttatatcacttattt 42234395  T

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