View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_low_13 (Length: 248)
Name: NF7840_low_13
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-125; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 10005459 - 10005696
Alignment:
| Q |
1 |
tgtaattggatttttattctttttatcaaggatttcattttaacatcatgatttatagtaggtgtgctgcttgcaagagtcaaagaagaaggtgccctcc |
100 |
Q |
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| T |
10005459 |
tgtaattggatttttattctttatatcaaggatttcattttaacatcatgatttatagtaggtgtgctgcttgcaagagtcaaagaagaaggtgccctcc |
10005558 |
T |
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| Q |
101 |
tgattgcattttctctccatatttccctcccaatgatcctcaaagattttcttctcttcaccgaatctatggtggtagcaatgttggaaaaatgcttcag |
200 |
Q |
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| T |
10005559 |
tgattgcattttctctccatatttccctcccaatgatcctcaaagattttcttctgttcaccgtatctatggtggtagcaatgttggaaaaatgcttcag |
10005658 |
T |
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| Q |
201 |
gtactcttaataatatattaaatatatcacttcaataa |
238 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
10005659 |
gtactcttaataatatattaaatatatcacttcaataa |
10005696 |
T |
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Target: chr5 (Bit Score: 118; Significance: 3e-60; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 30 - 203
Target Start/End: Complemental strand, 40608188 - 40608015
Alignment:
| Q |
30 |
ggatttcattttaacatcatgatttatagtaggtgtgctgcttgcaagagtcaaagaagaaggtgccctcctgattgcattttctctccatatttccctc |
129 |
Q |
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|||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
40608188 |
ggatttgattttgacatcatgatttatggtaggtgtgctgcttgcaagagtcaaagaagaaggtgcccttctgattgcattttctctccatattttccag |
40608089 |
T |
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| Q |
130 |
ccaatgatcctcaaagattttcttctcttcaccgaatctatggtggtagcaatgttggaaaaatgcttcaggta |
203 |
Q |
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| T |
40608088 |
ccaataatcctcaaagatttgcttctgtccacaaaatctatggtggtggcaatgttggaaaaatgcttcaggta |
40608015 |
T |
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