View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_low_16 (Length: 224)
Name: NF7840_low_16
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 6321635 - 6321858
Alignment:
| Q |
1 |
ttctcttcttttcagttgcctggacgtacagataatgagataaagaacttttggaacacaagatgcaagaaacggggtcgggcaaacttaccaatctacc |
100 |
Q |
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| T |
6321635 |
ttctcttcttttcagttgcctggacgtacagataatgagataaagaacttttggaacacaagatgcaagaaacggggtcgggcaaacttaccaatctacc |
6321734 |
T |
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| Q |
101 |
ctgaagatttatcatctgaatgtctgctgaatcaagaaaatgctgacatgttgacaaatgaagccagccagcatgatgaagcagagaacaaagtacctga |
200 |
Q |
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| T |
6321735 |
ctgaagatttatcatctgaatgtctgctgaatcaagaaaatgctgacatgttgacaaatgaagccagccagcatgatgaagcagagaacaaagtacctga |
6321834 |
T |
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| Q |
201 |
ggtgatatttaaagattacaaact |
224 |
Q |
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| T |
6321835 |
agtgatatttaaagattacaaact |
6321858 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 16334985 - 16334939
Alignment:
| Q |
13 |
cagttgcctggacgtacagataatgagataaagaacttttggaacac |
59 |
Q |
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| T |
16334985 |
cagttacctggtcgtacagataacgagataaagaactattggaacac |
16334939 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 56
Target Start/End: Original strand, 2915552 - 2915594
Alignment:
| Q |
14 |
agttgcctggacgtacagataatgagataaagaacttttggaa |
56 |
Q |
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| T |
2915552 |
agttgcctggtcgtacagataatgaaataaagaactattggaa |
2915594 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 28944922 - 28944890
Alignment:
| Q |
28 |
acagataatgagataaagaacttttggaacaca |
60 |
Q |
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||||| ||||||||||||||||||||||||||| |
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| T |
28944922 |
acagacaatgagataaagaacttttggaacaca |
28944890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 60
Target Start/End: Complemental strand, 1318497 - 1318465
Alignment:
| Q |
28 |
acagataatgagataaagaacttttggaacaca |
60 |
Q |
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| T |
1318497 |
acagataatgagataaagaatttttggaacaca |
1318465 |
T |
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