View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7840_low_3 (Length: 573)

Name: NF7840_low_3
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7840_low_3
NF7840_low_3
[»] chr3 (24 HSPs)
chr3 (24-554)||(53620213-53620742)
chr3 (24-76)||(3707030-3707082)
chr3 (24-73)||(30131994-30132043)
chr3 (24-73)||(34306071-34306120)
chr3 (24-73)||(41962083-41962132)
chr3 (24-73)||(43237215-43237264)
chr3 (24-73)||(47789554-47789603)
chr3 (24-73)||(3043226-3043275)
chr3 (24-73)||(33982827-33982876)
chr3 (100-149)||(39114960-39115009)
chr3 (24-73)||(47714780-47714829)
chr3 (24-73)||(49860760-49860809)
chr3 (24-73)||(55439508-55439557)
chr3 (24-72)||(29623162-29623210)
chr3 (195-238)||(35283250-35283293)
chr3 (24-75)||(38515175-38515226)
chr3 (24-66)||(36796347-36796389)
chr3 (96-149)||(1132931-1132984)
chr3 (24-73)||(23163448-23163497)
chr3 (24-73)||(24242200-24242249)
chr3 (24-73)||(43007604-43007653)
chr3 (24-73)||(44412262-44412311)
chr3 (24-73)||(46312529-46312578)
chr3 (24-76)||(32858755-32858807)
[»] chr1 (34 HSPs)
chr1 (24-82)||(50586972-50587029)
chr1 (24-73)||(23871571-23871620)
chr1 (25-79)||(47742456-47742510)
chr1 (24-73)||(1688324-1688373)
chr1 (24-73)||(13255268-13255317)
chr1 (24-73)||(27499908-27499957)
chr1 (24-73)||(40707306-40707355)
chr1 (25-73)||(32295569-32295617)
chr1 (25-73)||(33991466-33991514)
chr1 (24-75)||(52073553-52073604)
chr1 (24-74)||(50599068-50599118)
chr1 (24-73)||(2926042-2926091)
chr1 (24-77)||(17556592-17556644)
chr1 (24-73)||(17688262-17688311)
chr1 (195-240)||(49102848-49102893)
chr1 (24-76)||(36886794-36886846)
chr1 (196-240)||(50084291-50084335)
chr1 (98-149)||(33324657-33324708)
chr1 (24-82)||(7915437-7915495)
chr1 (33-75)||(36385275-36385317)
chr1 (24-69)||(1523518-1523563)
chr1 (24-73)||(11017523-11017572)
chr1 (28-73)||(14152628-14152673)
chr1 (24-73)||(26757263-26757312)
chr1 (24-73)||(38794894-38794943)
chr1 (24-73)||(39889766-39889815)
chr1 (24-73)||(42162161-42162210)
chr1 (24-73)||(43572060-43572108)
chr1 (195-240)||(50097777-50097822)
chr1 (25-73)||(938346-938394)
chr1 (196-240)||(5883477-5883521)
chr1 (24-76)||(26940530-26940582)
chr1 (27-79)||(49103054-49103105)
chr1 (96-140)||(50476560-50476604)
[»] chr8 (18 HSPs)
chr8 (24-73)||(34272439-34272488)
chr8 (24-73)||(36906111-36906160)
chr8 (24-79)||(39193855-39193910)
chr8 (24-73)||(6742-6791)
chr8 (24-73)||(1942141-1942190)
chr8 (24-73)||(4734604-4734653)
chr8 (24-72)||(34304640-34304688)
chr8 (24-79)||(79715-79770)
chr8 (25-72)||(31297456-31297503)
chr8 (140-222)||(13258593-13258676)
chr8 (24-82)||(35376727-35376785)
chr8 (24-77)||(1840309-1840362)
chr8 (24-73)||(3404681-3404730)
chr8 (96-149)||(10605153-10605206)
chr8 (24-73)||(37659639-37659688)
chr8 (98-149)||(16424171-16424223)
chr8 (29-73)||(29611921-29611965)
chr8 (101-149)||(31305781-31305829)
[»] chr5 (19 HSPs)
chr5 (24-73)||(38302461-38302510)
chr5 (29-72)||(4649096-4649139)
chr5 (98-149)||(32125269-32125320)
chr5 (24-73)||(1658101-1658150)
chr5 (96-149)||(9096341-9096394)
chr5 (24-73)||(10295407-10295456)
chr5 (24-73)||(26149527-26149576)
chr5 (24-73)||(27480278-27480327)
chr5 (24-73)||(35700984-35701033)
chr5 (98-149)||(3676511-3676562)
chr5 (98-149)||(19389824-19389875)
chr5 (26-64)||(6816258-6816296)
chr5 (24-73)||(2020905-2020954)
chr5 (27-76)||(6491427-6491476)
chr5 (103-151)||(13450508-13450557)
chr5 (96-149)||(37909023-37909076)
chr5 (24-56)||(13449865-13449897)
chr5 (25-73)||(17092823-17092871)
chr5 (200-240)||(35704780-35704820)
[»] chr4 (30 HSPs)
chr4 (24-77)||(54205760-54205813)
chr4 (24-73)||(7182299-7182348)
chr4 (24-73)||(16535615-16535664)
chr4 (24-73)||(37756821-37756870)
chr4 (24-73)||(38317337-38317386)
chr4 (24-73)||(41363920-41363969)
chr4 (24-73)||(48830923-48830972)
chr4 (24-76)||(35959120-35959172)
chr4 (26-73)||(17873122-17873169)
chr4 (102-149)||(28880029-28880076)
chr4 (24-73)||(13270381-13270430)
chr4 (96-149)||(48417606-48417659)
chr4 (24-73)||(56504576-56504625)
chr4 (25-73)||(904122-904170)
chr4 (199-238)||(3075639-3075678)
chr4 (98-149)||(47063716-47063767)
chr4 (24-82)||(21081274-21081332)
chr4 (25-79)||(46177029-46177083)
chr4 (195-241)||(46669816-46669862)
chr4 (98-143)||(13984976-13985021)
chr4 (24-73)||(24279838-24279887)
chr4 (195-240)||(31418829-31418874)
chr4 (24-73)||(31529943-31529992)
chr4 (24-73)||(38365953-38366002)
chr4 (25-82)||(45022818-45022875)
chr4 (24-77)||(48620204-48620256)
chr4 (96-149)||(51258735-51258788)
chr4 (196-240)||(6836563-6836607)
chr4 (24-72)||(13269877-13269925)
chr4 (24-76)||(45971486-45971538)
[»] chr7 (18 HSPs)
chr7 (24-73)||(23620901-23620950)
chr7 (24-73)||(33113749-33113798)
chr7 (24-73)||(34652159-34652208)
chr7 (24-76)||(3658616-3658668)
chr7 (96-140)||(19644323-19644367)
chr7 (24-72)||(33406741-33406789)
chr7 (24-73)||(28437650-28437699)
chr7 (24-73)||(42620459-42620508)
chr7 (24-79)||(38505436-38505491)
chr7 (99-149)||(38505340-38505390)
chr7 (195-240)||(4787875-4787920)
chr7 (24-73)||(5968151-5968200)
chr7 (24-73)||(19644225-19644274)
chr7 (195-240)||(22556577-22556622)
chr7 (195-240)||(32228931-32228976)
chr7 (195-240)||(40985272-40985317)
chr7 (25-73)||(36747222-36747270)
chr7 (199-239)||(38679864-38679904)
[»] chr2 (22 HSPs)
chr2 (24-72)||(19382802-19382850)
chr2 (24-76)||(36030738-36030790)
chr2 (98-149)||(15803212-15803263)
chr2 (28-79)||(16625883-16625934)
chr2 (26-73)||(25960718-25960765)
chr2 (195-240)||(11522055-11522100)
chr2 (24-73)||(12964080-12964129)
chr2 (24-73)||(44137076-44137125)
chr2 (24-72)||(3039057-3039105)
chr2 (24-79)||(4003352-4003407)
chr2 (26-73)||(6711940-6711987)
chr2 (24-79)||(16519191-16519245)
chr2 (24-73)||(8555884-8555933)
chr2 (28-77)||(12941905-12941953)
chr2 (195-240)||(15803335-15803380)
chr2 (24-73)||(18826340-18826389)
chr2 (24-73)||(30312513-30312562)
chr2 (24-73)||(32243399-32243448)
chr2 (25-73)||(8411038-8411086)
chr2 (24-76)||(31082740-31082792)
chr2 (25-73)||(36567386-36567434)
chr2 (25-73)||(38023553-38023601)
[»] chr6 (9 HSPs)
chr6 (98-149)||(20820536-20820587)
chr6 (24-79)||(26713787-26713842)
chr6 (24-73)||(1029217-1029266)
chr6 (24-73)||(24734806-24734855)
chr6 (96-149)||(26713885-26713938)
chr6 (24-73)||(29241941-29241990)
chr6 (98-149)||(29054601-29054652)
chr6 (24-69)||(14275910-14275955)
chr6 (24-72)||(5825257-5825305)
[»] scaffold0036 (1 HSPs)
scaffold0036 (24-79)||(82720-82775)
[»] scaffold1163 (1 HSPs)
scaffold1163 (24-76)||(1982-2034)
[»] scaffold0373 (1 HSPs)
scaffold0373 (196-240)||(8979-9023)


Alignment Details
Target: chr3 (Bit Score: 470; Significance: 0; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 470; E-Value: 0
Query Start/End: Original strand, 24 - 554
Target Start/End: Original strand, 53620213 - 53620742
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcataatacaaaatctttcaaaaattgtattggatgaggatttta 123  Q
    |||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  53620213 ggaaggagcaagtgggagaaatagaggacattgagagcggagggctttgggggtttcataatacaaaatctttcaaaaattgtattggatgaggatttta 53620312  T
Q  124 gaggatttatatgaattcttaaaattaaaacatactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagatttct 223  Q
    |||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||       |||||||||||||||||||||||||||||    
T  53620313 gagggtttatatgaattattaaaattaaaacatactaattgtaagaattaatttatcattctctaaaaaaatactctttcaaaaaatgtgtaagatttct 53620412  T
Q  224 caaatttttcctatattacccctccctccaaacaaagccttaggaaattattacaagacaaaactgatcaaaacatgagttagataattatacacatgat 323  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53620413 caaatttttcctatattacccctccctccaaacaaagccttaggaa-ttattacaagacaaaactgatcaaaacatgagttagataattatacacatgat 53620511  T
Q  324 aaggggttagtgagtgtctaactaagtcaactaatcccaaactaacttaacagtcagtaactacaacagcttaagtgaagctttctatgtaattgataca 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53620512 aaggggttagtgagtgtctaactaagtcaactaatcccaaactaacttaacagtcagtaactacaacagcttaagtgaagctttctatgtaattgataca 53620611  T
Q  424 tatttcataaacataaattattctaagattttttaaatattgagattgagatcaccagtgtactcccttaccaagtgaggtttctttttatcttccattt 523  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53620612 tatttcataaacataaattattctaagattttttaaatattgagattgagatcaccagtgtactctcttaccaagtgaggtttctttttatcttccattt 53620711  T
Q  524 taataataggccggaaccaagggtccaaggc 554  Q
    ||||||||||| |||||||||||||||||||    
T  53620712 taataataggcaggaaccaagggtccaaggc 53620742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 3707030 - 3707082
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    ||||||||||||||| ||||||||| ||||||||||||||| |||||||||||    
T  3707030 ggaaggagcaagtggaagaaatagatgacattgagaggagaaggctttggggg 3707082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 30132043 - 30131994
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  30132043 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 30131994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 34306071 - 34306120
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  34306071 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 34306120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 41962132 - 41962083
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  41962132 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 41962083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 43237215 - 43237264
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  43237215 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 43237264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 47789603 - 47789554
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  47789603 ggaaggagcaagtggaagaaatagaagacattgagaggagagagctttgg 47789554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 3043275 - 3043226
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  3043275 ggaaggagcaagtggaagaaatagaagacattgggaggagaggcctttgg 3043226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 33982876 - 33982827
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  33982876 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 33982827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 100 - 149
Target Start/End: Complemental strand, 39115009 - 39114960
Alignment:
Q  100 aaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||| ||||| |||||||| ||||||||||||||| |||||    
T  39115009 aaattgtattggaggaggactttagagggtttatatgaattcttcaaatt 39114960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 47714829 - 47714780
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  47714829 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 47714780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 49860760 - 49860809
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  49860760 ggaaggagcaattggaagaaatagaagacattgggaggagagggctttgg 49860809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 55439508 - 55439557
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||| |||||||||| ||||||||||||||||| ||||||||| ||||||    
T  55439508 ggaatgagcaagtggaagaaatagaggacattgggaggagaggactttgg 55439557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 29623162 - 29623210
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    ||||||||||||||| ||||||||||||||||  |||| ||||||||||    
T  29623162 ggaaggagcaagtggaagaaatagaggacattaggaggggagggctttg 29623210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 195 - 238
Target Start/End: Original strand, 35283250 - 35283293
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctata 238  Q
    ||||||||||||||||||| |||||||||||| ||| |||||||    
T  35283250 tactctttcaaaaaatgtgaaagatttctcaattttctcctata 35283293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 38515175 - 38515226
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggg 75  Q
    ||||||||||||||  ||||||||| || |||| ||||||||||||||||||    
T  38515175 ggaaggagcaagtgaaagaaatagaagatattgggaggagagggctttgggg 38515226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 66
Target Start/End: Original strand, 36796347 - 36796389
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagg 66  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||    
T  36796347 ggaaggagcaagtggaagaaatagaagacattgggaggagagg 36796389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 1132984 - 1132931
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||||| |||| |||| |||| |||| |||||||||| |||||    
T  1132984 tcaaaaattgtattggaggagggttttggagggtttacatgaattctttaaatt 1132931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 23163448 - 23163497
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||   ||||||||||||||||    
T  23163448 ggaaggagcaagtggaagaaatagaagacatcaggaggagagggctttgg 23163497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 24242249 - 24242200
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| || |||| ||||||||| ||||||    
T  24242249 ggaaggagcaagtggaagaaatagaagatattgggaggagaggactttgg 24242200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 43007653 - 43007604
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||| ||||||||| ||||||||| || |||| ||||||||||||||||    
T  43007653 ggaagtagcaagtggaagaaatagaagatattgggaggagagggctttgg 43007604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 44412311 - 44412262
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  44412311 ggaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 44412262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 46312578 - 46312529
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||  |||||| ||||||||| ||||||| ||||||||||||||||    
T  46312578 ggaaggactaagtggaagaaatagaagacattgggaggagagggctttgg 46312529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 32858755 - 32858807
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    |||| |||||||||| ||||||||| ||||||||||||  | |||||||||||    
T  32858755 ggaatgagcaagtggaagaaatagatgacattgagagggaaaggctttggggg 32858807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 50586972 - 50587029
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 82  Q
    ||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||    
T  50586972 ggaaggagcaagtggaagaaatagaggacattgagagg-gagggctttggggggttcat 50587029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 23871620 - 23871571
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  23871620 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 23871571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 47742456 - 47742510
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    ||||||| |||||| |||||||||||||||||||| | |||||||||||||||||    
T  47742456 gaaggagtaagtggaagaaatagaggacattgagaagggagggctttggggggtt 47742510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 1688373 - 1688324
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  1688373 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 1688324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 13255268 - 13255317
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  13255268 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 13255317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 27499908 - 27499957
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  27499908 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 27499957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 40707355 - 40707306
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  40707355 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 40707306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 32295569 - 32295617
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  32295569 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 32295617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 33991466 - 33991514
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33991466 gaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33991514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Complemental strand, 52073604 - 52073553
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggg 75  Q
    ||||||||||||||| ||||||||| |||||||||||| || ||||||||||    
T  52073604 ggaaggagcaagtggaagaaatagatgacattgagaggggaaggctttgggg 52073553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 50599118 - 50599068
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggg 74  Q
    ||||||||||||||| | ||||||||||| |||||||| ||||||||||||    
T  50599118 ggaaggagcaagtggaaaaaatagaggactttgagaggggagggctttggg 50599068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 2926091 - 2926042
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| | ||||||| ||||||| ||||||||||||||||    
T  2926091 ggaaggagcaagtggaaaaaatagaagacattgggaggagagggctttgg 2926042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 17556592 - 17556644
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 77  Q
    |||||||| |||||| ||||||||||||||||| ||||||| ||||||||||||    
T  17556592 ggaaggagtaagtggaagaaatagaggacattgggaggaga-ggctttgggggg 17556644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 17688262 - 17688311
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| |||||||||  |||||| ||||||||||||||||    
T  17688262 ggaaggagcaagtggaagaaatagaaaacattgggaggagagggctttgg 17688311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 49102893 - 49102848
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  49102893 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 49102848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 36886794 - 36886846
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    |||| |||||||||| |||||||||||| | ||||||| ||||||||||||||    
T  36886794 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggctttggggg 36886846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 50084291 - 50084335
Alignment:
Q  196 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    |||||||||||||||||| || ||||||||| |||||||||||||    
T  50084291 actctttcaaaaaatgtgaaaaatttctcaattttttcctatatt 50084335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 33324657 - 33324708
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    |||||||||||| || |||| ||||||||| ||||||||||||||| |||||    
T  33324657 aaaaattgtattagaggagggttttagagggtttatatgaattcttcaaatt 33324708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 7915437 - 7915495
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 82  Q
    ||||||||||||||| | |||||||| || ||| |||  ||||||||||||||||||||    
T  7915437 ggaaggagcaagtggaaaaaatagagaactttgggagaggagggctttggggggttcat 7915495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 36385275 - 36385317
Alignment:
Q  33 aagtgggagaaatagaggacattgagaggagagggctttgggg 75  Q
    |||||| ||||||||||||||||||||| |||||| |||||||    
T  36385275 aagtggaagaaatagaggacattgagagaagagggttttgggg 36385317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 1523518 - 1523563
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 69  Q
    |||||||||| |||| ||||||||| ||||||| ||||||||||||    
T  1523518 ggaaggagcaggtggaagaaatagaagacattgggaggagagggct 1523563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 11017523 - 11017572
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||| | ||||||||||| | ||||||||||    
T  11017523 ggaaggagcaagtggaagaaatatatgacattgagagaaaagggctttgg 11017572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 73
Target Start/End: Original strand, 14152628 - 14152673
Alignment:
Q  28 ggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  14152628 ggagcaagtggaagaaatagaagacattgggaggagagggttttgg 14152673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 26757312 - 26757263
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||| ||| ||||||||| || |||| ||||||||||||||||    
T  26757312 ggaaggagcaaatggaagaaatagaagatattgggaggagagggctttgg 26757263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 38794894 - 38794943
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| | ||||||| || |||| ||||||||||||||||    
T  38794894 ggaaggagcaagtggaaaaaatagaagatattgggaggagagggctttgg 38794943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 39889815 - 39889766
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||| |||||| | ||||||| ||||||| ||||||||||||||||    
T  39889815 ggaaggagtaagtggaaaaaatagaagacattgggaggagagggctttgg 39889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 42162210 - 42162161
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  42162210 ggaaggagcaagtggaagaaatagatgacattggaaggagagggttttgg 42162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 43572108 - 43572060
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  43572108 ggaatgagcaagtggaagaaatagaagacattg-gaggagagggctttgg 43572060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 50097777 - 50097822
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||||||| |||||||||||| |||| | ||||||    
T  50097777 tactctttcaaaaaatgtgaaagatttctcaatttttccttatatt 50097822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 938394 - 938346
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||| ||||||| ||||||||| || ||||||||||||||| |||||    
T  938394 gaaggatcaagtggaagaaatagaagatattgagaggagagggttttgg 938346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 5883521 - 5883477
Alignment:
Q  196 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||| || || ||||||||| |||||||||||||    
T  5883521 actctttcaaaaaatatgaaaaatttctcaattttttcctatatt 5883477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 26940530 - 26940582
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    ||||||||||||||| ||||||||| |||||||  ||||||| |||| |||||    
T  26940530 ggaaggagcaagtggaagaaatagaagacattggaaggagagagcttcggggg 26940582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 27 - 79
Target Start/End: Complemental strand, 49103105 - 49103054
Alignment:
Q  27 aggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    ||||| |||||| ||||||||||||||||| |||||| ||||||||| |||||    
T  49103105 aggagtaagtggaagaaatagaggacattgggaggag-gggctttggagggtt 49103054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 50476560 - 50476604
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 140  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||    
T  50476560 tcaaaaattgtattggaggagggttttcgagggtttatatgaatt 50476604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 34272439 - 34272488
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  34272439 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 34272488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 36906111 - 36906160
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  36906111 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 36906160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 39193855 - 39193910
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    ||||| ||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  39193855 ggaagtagcaagtggaagaaatagagtacattgggaggggagggctttggggggtt 39193910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 6742 - 6791
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| |||||||    
T  6742 ggaaggagcaagtggaagaaatagaagacattgggaggagagagctttgg 6791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 1942190 - 1942141
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||| ||||||| ||||||||| ||||||| ||||||||||||||||    
T  1942190 ggaaggatcaagtggaagaaatagaagacattgggaggagagggctttgg 1942141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 4734653 - 4734604
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||| |||||    
T  4734653 ggaaggagcaagtggaagaaatagaagacattgggaggagagggttttgg 4734604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 34304640 - 34304688
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    ||||||||||||||| ||||||||| |||||| ||| ||||||||||||    
T  34304640 ggaaggagcaagtggaagaaatagaagacattaagatgagagggctttg 34304688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 79770 - 79715
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    |||| |||||||||| |||||||||||| | || |||| |||||||||||||||||    
T  79770 ggaacgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggtt 79715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 72
Target Start/End: Complemental strand, 31297503 - 31297456
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    |||||||||||||| ||||||||| ||||||| ||||||| |||||||    
T  31297503 gaaggagcaagtggaagaaatagaagacattgggaggagatggctttg 31297456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 140 - 222
Target Start/End: Original strand, 13258593 - 13258676
Alignment:
Q  140 tcttaaaattaaaac-atactaattgaaagaattaatttatcattctctnnnnnnntactctttcaaaaaatgtgtaagatttc 222  Q
    ||||||||||||||  ||| |||| | ||| ||||||||||||||||||       ||||||||||||||||||| ||||||||    
T  13258593 tcttaaaattaaaaatatattaatcgtaagcattaatttatcattctctaaaaaaatactctttcaaaaaatgtgaaagatttc 13258676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 35376785 - 35376727
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 82  Q
    ||||| |||||||||  |||||| |||||||||| ||| ||| ||||||||||||||||    
T  35376785 ggaagaagcaagtggacgaaataaaggacattgaaaggggagagctttggggggttcat 35376727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 1840362 - 1840309
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 77  Q
    ||||||||||||||| |||||| |||||||||  |||  |||||||||||||||    
T  1840362 ggaaggagcaagtggaagaaattgaggacattcggagaggagggctttgggggg 1840309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 3404730 - 3404681
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||  ||||||| ||||||||    
T  3404730 ggaaggagcaagtggaagaaatagaagacattaggaggagaaggctttgg 3404681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 10605206 - 10605153
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||| |||||||||||||||| |||| |||  ||||||||||||||| |||||    
T  10605206 tcaaatattgtattggatgagggttttcgagagtttatatgaattctttaaatt 10605153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 37659688 - 37659639
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||  ||||| ||||||||| ||||||| ||||||||||||||||    
T  37659688 ggaaggagtgagtggaagaaatagaagacattgggaggagagggctttgg 37659639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 16424171 - 16424223
Alignment:
Q  98 aaaaattgtattggatgaggatttt-agaggatttatatgaattcttaaaatt 149  Q
    |||||||||||| || ||||||||| ||||| ||||||||||||||| |||||    
T  16424171 aaaaattgtattagaggaggattttgagagggtttatatgaattcttcaaatt 16424223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Original strand, 29611921 - 29611965
Alignment:
Q  29 gagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||| ||||||| | ||||||| ||||||||||||||||    
T  29611921 gagcaagtggaagaaatataagacattgggaggagagggctttgg 29611965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 101 - 149
Target Start/End: Complemental strand, 31305829 - 31305781
Alignment:
Q  101 aattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||  |||||||| |||| ||||||||||||||| |||||    
T  31305829 aattgtattggagaaggattttggagggtttatatgaattcttcaaatt 31305781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 38302510 - 38302461
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  38302510 ggaaggagcaagtggaagaaatagaagacattgagaggagagggctttgg 38302461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 29 - 72
Target Start/End: Complemental strand, 4649139 - 4649096
Alignment:
Q  29 gagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  4649139 gagcaagtggaagaaatagaagacattgagaggagagggctttg 4649096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 32125320 - 32125269
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||| |||||||||||||| ||| ||||||||||| |||||    
T  32125320 aaaaattgtattggaggaggattttagagggtttgtatgaattcttcaaatt 32125269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 1658101 - 1658150
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| ||||||    
T  1658101 ggaaggagcaagtggaagaaatagaagacattgggaggagaggactttgg 1658150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 9096341 - 9096394
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    |||| |||||||||||| ||||||||| |||| ||||||||||||||| |||||    
T  9096341 tcaacaattgtattggaggaggattttggagggtttatatgaattcttcaaatt 9096394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 10295407 - 10295456
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||| ||||||||    
T  10295407 ggaaggagcaagtggaagaaatagaagacattgggaggagatggctttgg 10295456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 26149527 - 26149576
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||| ||||||| ||||||||| ||||||| ||||||||||||||||    
T  26149527 ggaaggatcaagtggaagaaatagaagacattgggaggagagggctttgg 26149576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 27480327 - 27480278
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||| ||||||||| ||||||||| ||||||| ||||||||||||||||    
T  27480327 ggaagaagcaagtggaagaaatagaagacattgggaggagagggctttgg 27480278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 35700984 - 35701033
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  35700984 ggaaggagcaagtgaaagaaatagaagacattgggaggagagggctttgg 35701033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 3676562 - 3676511
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||| |||||||||  ||| ||||||||||||||| |||||    
T  3676562 aaaaattgtattggaggaggattttgaagggtttatatgaattcttcaaatt 3676511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 19389875 - 19389824
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||| ||||||||| |||| |||| |||||||||| |||||    
T  19389875 aaaaattgtattggaggaggattttggagggtttacatgaattcttcaaatt 19389824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 26 - 64
Target Start/End: Original strand, 6816258 - 6816296
Alignment:
Q  26 aaggagcaagtgggagaaatagaggacattgagaggaga 64  Q
    ||||||||||||| ||||||||| |||||||||||||||    
T  6816258 aaggagcaagtggaagaaatagatgacattgagaggaga 6816296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 2020905 - 2020954
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||  ||||||| |||||||| |||||||    
T  2020905 ggaaggagcaagtggaagaaatagtagacattgggaggagagagctttgg 2020954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 6491476 - 6491427
Alignment:
Q  27 aggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    |||||||||||| ||||||||| || ||||  ||||||||||||||||||    
T  6491476 aggagcaagtggaagaaatagaagaaattggtaggagagggctttggggg 6491427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 151
Target Start/End: Original strand, 13450508 - 13450557
Alignment:
Q  103 ttgtattggatgaggattttagaggatttatatgaattctt-aaaattaa 151  Q
    |||||||||| ||||||||| ||||||||||||||| |||| ||||||||    
T  13450508 ttgtattggaggaggattttggaggatttatatgaactcttcaaaattaa 13450557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 37909023 - 37909076
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    |||||| |||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  37909023 tcaaaagttgtattggaggagggttttggagggtttatatgaattcttcaaatt 37909076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 13449865 - 13449897
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattg 56  Q
    |||||||||||||||||||||| ||||||||||    
T  13449865 ggaaggagcaagtgggagaaattgaggacattg 13449897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 17092823 - 17092871
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||||| ||| ||||| |||||||  |||||||||||||||    
T  17092823 gaaggagcaagtggaagatatagaagacattggaaggagagggctttgg 17092871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 200 - 240
Target Start/End: Original strand, 35704780 - 35704820
Alignment:
Q  200 tttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    |||||||||||||| |||||||||| | |||||||||||||    
T  35704780 tttcaaaaaatgtgaaagatttctctattttttcctatatt 35704820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 54205760 - 54205813
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 77  Q
    ||||||||||||||| ||||||||||||| |||||||| |||||||||||||||    
T  54205760 ggaaggagcaagtggaagaaatagaggactttgagaggggagggctttgggggg 54205813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 7182348 - 7182299
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||    
T  7182348 ggaaggagcaagtggaagaaatagaagacattgagaggagagagctttgg 7182299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 16535615 - 16535664
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  16535615 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 16535664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 37756870 - 37756821
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  37756870 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 37756821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 38317386 - 38317337
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  38317386 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 38317337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 41363969 - 41363920
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  41363969 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 41363920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 48830972 - 48830923
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  48830972 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 48830923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 35959120 - 35959172
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    ||||||||||||||| |||||||||| |||||| |||| ||||||||||||||    
T  35959120 ggaaggagcaagtggaagaaatagagtacattgtgaggggagggctttggggg 35959172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Original strand, 17873122 - 17873169
Alignment:
Q  26 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  17873122 aaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 17873169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 102 - 149
Target Start/End: Original strand, 28880029 - 28880076
Alignment:
Q  102 attgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||| ||||||||||| |||||||||||||||||||| |||||    
T  28880029 attgtattgaatgaggattttggaggatttatatgaattcttcaaatt 28880076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 13270430 - 13270381
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||| ||||||||||||    
T  13270430 ggaaggagcaagtggaagaaatagaagacattgggagtagagggctttgg 13270381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 48417659 - 48417606
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||||| ||||||||| |||| | ||||||||||||| |||||    
T  48417659 tcaaaaattgtattggaggaggattttggagggtctatatgaattcttcaaatt 48417606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 56504625 - 56504576
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||  ||||||||| ||||||| ||||||||||||||||    
T  56504625 ggaaggagcaagtgcaagaaatagaagacattgggaggagagggctttgg 56504576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 904122 - 904170
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||||| ||||||||| ||||||  ||||||||||||||||    
T  904122 gaaggagcaagtggaagaaatagaagacattcggaggagagggctttgg 904170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 238
Target Start/End: Complemental strand, 3075678 - 3075639
Alignment:
Q  199 ctttcaaaaaatgtgtaagatttctcaaatttttcctata 238  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  3075678 ctttcaaaaaatgtgaaagatttctgaaatttttcctata 3075639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 47063716 - 47063767
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||| |||||||| ||||| ||||| ||||||||| |||||    
T  47063716 aaaaattgtattggaagaggatttgagagggtttatgtgaattcttcaaatt 47063767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 21081274 - 21081332
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 82  Q
    ||||||||||||||| ||||||||| |||||||||||| ||  | ||||| ||||||||    
T  21081274 ggaaggagcaagtggaagaaatagatgacattgagaggggaatgttttggagggttcat 21081332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 25 - 79
Target Start/End: Complemental strand, 46177083 - 46177029
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    |||||| ||||||| |||||||||| |||||| |||| ||||| |||||||||||    
T  46177083 gaaggaacaagtggaagaaatagagtacattgggaggggagggttttggggggtt 46177029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 241
Target Start/End: Complemental strand, 46669862 - 46669816
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatta 241  Q
    |||||||| |||||||||| |||||||||||| |||||||| |||||    
T  46669862 tactctttaaaaaaatgtgaaagatttctcaattttttcctgtatta 46669816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 143
Target Start/End: Complemental strand, 13985021 - 13984976
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattctt 143  Q
    ||||||||||||||| |||| |||| |||||||||||||| |||||    
T  13985021 aaaaattgtattggaggagggttttggaggatttatatgagttctt 13984976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 24279838 - 24279887
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| || |||| | ||||||| ||||||||||||||||    
T  24279838 ggaaggagcaagtggaaggaataaaagacattgggaggagagggctttgg 24279887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 31418874 - 31418829
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    |||||||||||||| |||| ||||||| |||| |||||||||||||    
T  31418874 tactctttcaaaaactgtgaaagatttatcaattttttcctatatt 31418829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 31529943 - 31529992
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||| | |||||||||| |||||    
T  31529943 ggaaggagcaagtggaagaaatagaagacatcgggaggagagggttttgg 31529992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 38365953 - 38366002
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||||  |||||||| ||||||    
T  38365953 ggaaggagcaagtggaagaaatagaagacattggaaggagaggactttgg 38366002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 45022875 - 45022818
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggttcat 82  Q
    |||||||||||||| | |||||| |||| |||||||| ||||||||| | ||||||||    
T  45022875 gaaggagcaagtggaaaaaataggggactttgagaggggagggctttagtgggttcat 45022818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 77
Target Start/End: Original strand, 48620204 - 48620256
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 77  Q
    |||||||| |||||| |||||||||||||||||  ||||| |||||||||||||    
T  48620204 ggaaggagtaagtggaagaaatagaggacattggaaggag-gggctttgggggg 48620256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 149
Target Start/End: Complemental strand, 51258788 - 51258735
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    |||||||||| ||||||||| |||||| |||||||||||  ||||||| |||||    
T  51258788 tcaaaaattgcattggatgaagattttggaggatttatacaaattcttcaaatt 51258735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 6836563 - 6836607
Alignment:
Q  196 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  6836563 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 6836607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 13269877 - 13269925
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    ||||||||||||||| ||||||||| ||||| | || ||||||||||||    
T  13269877 ggaaggagcaagtggaagaaatagaagacatcgtgaagagagggctttg 13269925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 45971486 - 45971538
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    |||| |||||||||| |||||||||||| | ||||||| ||||| ||||||||    
T  45971486 ggaatgagcaagtggaagaaatagaggaaaatgagaggggagggttttggggg 45971538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 23620950 - 23620901
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  23620950 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 23620901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 33113798 - 33113749
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  33113798 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 33113749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 34652208 - 34652159
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||||||||||    
T  34652208 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttgg 34652159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 3658668 - 3658616
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| ||||||||||    
T  3658668 ggaaggagcaagtggaagaaatagaagacattgggaggagagagctttggggg 3658616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 96 - 140
Target Start/End: Original strand, 19644323 - 19644367
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaatt 140  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  19644323 tcaaaaattgtattggatgagggttttggaggatttatatgaatt 19644367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 33406789 - 33406741
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    ||||||||||||||| ||||||||| ||||||| |||||||||||||||    
T  33406789 ggaaggagcaagtggaagaaatagaagacattgggaggagagggctttg 33406741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 28437699 - 28437650
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||| | ||||||| ||||||||||||||||    
T  28437699 ggaaggagcaagtggaagaaataaaagacattgggaggagagggctttgg 28437650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 42620508 - 42620459
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  42620508 ggaatgagcaagtggaagaaatagaagacattgggaggagagggctttgg 42620459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 38505491 - 38505436
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    |||| |||||||||| |||||||||||| | || |||| |||||||||||||||||    
T  38505491 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggtt 38505436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 38505390 - 38505340
Alignment:
Q  99 aaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    |||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  38505390 aaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt 38505340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 4787920 - 4787875
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||||||| || ||||||||| |||| ||||||||    
T  4787920 tactctttcaaaaaatgtgaaaaatttctcaatttttccctatatt 4787875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 5968200 - 5968151
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||||| || |||||||    
T  5968200 ggaaggagcaagtggaagaaatagaagacattgggaggaaagcgctttgg 5968151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 19644225 - 19644274
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||| | |||||||||| ||||| |||||||    
T  19644225 ggaaggagcaagtggaagaaatacaagacattgagatgagagagctttgg 19644274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 22556622 - 22556577
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    |||||||| |||||||||| |||||||||||| |||| ||||||||    
T  22556622 tactcttttaaaaaatgtgaaagatttctcaatttttccctatatt 22556577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 32228931 - 32228976
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||||||| |||||||||||  ||||| |||||||    
T  32228931 tactctttcaaaaaatgtgaaagatttctcattttttttctatatt 32228976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 40985317 - 40985272
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||||||| || ||||||| | |||||||||||||    
T  40985317 tactctttcaaaaaatgtgaaatatttctctattttttcctatatt 40985272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 36747222 - 36747270
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  36747222 gaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 36747270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 199 - 239
Target Start/End: Complemental strand, 38679904 - 38679864
Alignment:
Q  199 ctttcaaaaaatgtgtaagatttctcaaatttttcctatat 239  Q
    ||||||||||||||| ||||||| ||||||||| |||||||    
T  38679904 ctttcaaaaaatgtgaaagatttatcaaattttccctatat 38679864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 19382802 - 19382850
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    ||||||||||||||| ||||||||| ||||||||||||| |||||||||    
T  19382802 ggaaggagcaagtggaagaaatagaagacattgagaggaaagggctttg 19382850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 36030738 - 36030790
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    ||||||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  36030738 ggaaggagccagtggaagaaatagaggaccttgagaagagagggctttggggg 36030790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 15803212 - 15803263
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||| ||||||||| |||| ||||||||||||||| |||||    
T  15803212 aaaaattgtattggaggaggattttggagggtttatatgaattcttcaaatt 15803263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 28 - 79
Target Start/End: Complemental strand, 16625934 - 16625883
Alignment:
Q  28 ggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    ||||||||||| |||||||||| |||||| |||| |||||||||||||||||    
T  16625934 ggagcaagtggaagaaatagagtacattgggaggggagggctttggggggtt 16625883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 25960765 - 25960718
Alignment:
Q  26 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||| ||||||||| |||||||| |||||||||||||||    
T  25960765 aaggagcaagtggaagaaatagaagacattgaaaggagagggctttgg 25960718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 195 - 240
Target Start/End: Complemental strand, 11522100 - 11522055
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||||||| |||||||||||| |||| ||||||||    
T  11522100 tactctttcaaaaaatgtgaaagatttctcaatttttccctatatt 11522055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 12964129 - 12964080
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| |||||||| |||||||    
T  12964129 ggaaggagcaagtggaagaaatagaagacattgggaggagagagctttgg 12964080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 44137076 - 44137125
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  44137076 ggaaggagcaaatggaagaaatagaagacattgggaggagagggctttgg 44137125  T

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Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 3039105 - 3039057
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    ||||||||||||||| | ||||||| ||||||| |||||||||||||||    
T  3039105 ggaaggagcaagtggaaaaaatagaagacattgggaggagagggctttg 3039057  T

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Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 4003352 - 4003407
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    |||| |||||||||| |||||||||||| | || |||| |||||||||||||||||    
T  4003352 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggggtt 4003407  T

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Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 26 - 73
Target Start/End: Complemental strand, 6711987 - 6711940
Alignment:
Q  26 aaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||| ||| ||| ||||||||| ||||||||||||||||||||||||    
T  6711987 aaggaacaaatggaagaaatagaagacattgagaggagagggctttgg 6711940  T

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Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 16519245 - 16519191
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    ||||||||||||||| |||||||||| |||||| |||| ||||||||||| |||||    
T  16519245 ggaaggagcaagtggaagaaatagagtacattg-gaggggagggctttggtgggtt 16519191  T

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Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 8555933 - 8555884
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||| ||| |||||| |||||    
T  8555933 ggaaggagcaagtggaagaaatagaagacattgggagaagagggttttgg 8555884  T

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Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 12941953 - 12941905
Alignment:
Q  28 ggagcaagtgggagaaatagaggacattgagaggagagggctttgggggg 77  Q
    |||| |||||| ||||||||||||||||| ||||| ||||||||||||||    
T  12941953 ggagtaagtggaagaaatagaggacattgggagga-agggctttgggggg 12941905  T

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Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 15803335 - 15803380
Alignment:
Q  195 tactctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    ||||||||||||||||||| |||||||||||| |||  ||||||||    
T  15803335 tactctttcaaaaaatgtgaaagatttctcaattttcccctatatt 15803380  T

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Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 18826389 - 18826340
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| ||||||  || |||||||||||||    
T  18826389 ggaaggagcaagtggaagaaatagaagacattaggaagagagggctttgg 18826340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 30312562 - 30312513
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| |||||||||  |||||| |||||||||| |||||    
T  30312562 ggaaggagcaagtggaagaaatagaacacattgggaggagagggttttgg 30312513  T

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Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 32243399 - 32243448
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||  || ||||||||| ||||||| ||||||||||||||||    
T  32243399 ggaaggagcaatgggaagaaatagaagacattgggaggagagggctttgg 32243448  T

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Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 8411086 - 8411038
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||| |  |||||||| ||||||| ||||||||||||||||    
T  8411086 gaaggagcaagttgaggaaatagaagacattgggaggagagggctttgg 8411038  T

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Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 31082740 - 31082792
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    |||| |||||||||| |||||||||||| | || |||| ||||||||||||||    
T  31082740 ggaatgagcaagtggaagaaatagaggaaaatgggaggggagggctttggggg 31082792  T

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Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 36567434 - 36567386
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||||| ||||||||| |||||||  ||||||||| |||||    
T  36567434 gaaggagcaagtggaagaaatagaagacattggaaggagagggttttgg 36567386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 38023601 - 38023553
Alignment:
Q  25 gaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||||||||||| | ||||||||| |||||||| ||||||||| |||||    
T  38023601 gaaggagcaagtagaagaaatagaagacattgaaaggagagggttttgg 38023553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 98 - 149
Target Start/End: Complemental strand, 20820587 - 20820536
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    |||||||||||||||||||  |||||||||||||||||||||| || |||||    
T  20820587 aaaaattgtattggatgagagttttagaggatttatatgaatttttcaaatt 20820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 26713787 - 26713842
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    ||||||||||||||| |||||||||| |||||| |||| |||||||||| ||||||    
T  26713787 ggaaggagcaagtggaagaaatagagtacattgggaggggagggctttgaggggtt 26713842  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 1029217 - 1029266
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||||||| ||||||||| |||||||  |||||||||||||||    
T  1029217 ggaaggagcaagtggaagaaatagaagacattggaaggagagggctttgg 1029266  T

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Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Original strand, 24734806 - 24734855
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||||||    
T  24734806 ggaacgagcaagtggaagaaatagaagacattgggaggagagggctttgg 24734855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 96 - 149
Target Start/End: Original strand, 26713885 - 26713938
Alignment:
Q  96 tcaaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||||||| |||| |||| |||| ||||||||||||||| |||||    
T  26713885 tcaaaaattgtattggaggagggttttggagggtttatatgaattcttcaaatt 26713938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 73
Target Start/End: Complemental strand, 29241990 - 29241941
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttgg 73  Q
    ||||||||||| ||| ||||||||| ||||||| ||||||||||||||||    
T  29241990 ggaaggagcaaatggaagaaatagaagacattgggaggagagggctttgg 29241941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 149
Target Start/End: Original strand, 29054601 - 29054652
Alignment:
Q  98 aaaaattgtattggatgaggattttagaggatttatatgaattcttaaaatt 149  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| || |||||    
T  29054601 aaaaattgtattgaatgaggatttttgagggtttatatgaatttttcaaatt 29054652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 69
Target Start/End: Original strand, 14275910 - 14275955
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggct 69  Q
    |||| |||||||||| ||||||||| ||||||| ||||||||||||    
T  14275910 ggaatgagcaagtggaagaaatagaagacattgggaggagagggct 14275955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 72
Target Start/End: Original strand, 5825257 - 5825305
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttg 72  Q
    ||||||||||||||  ||||||||| ||||||| ||||||| |||||||    
T  5825257 ggaaggagcaagtgaaagaaatagaagacattgggaggagaaggctttg 5825305  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 79
Target Start/End: Original strand, 82720 - 82775
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggggtt 79  Q
    ||||||||||||||| ||||||||| ||| ||||||| | |||||||| |||||||    
T  82720 ggaaggagcaagtggaagaaatagatgactttgagagaaaagggctttcgggggtt 82775  T

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Target: scaffold1163 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 1982 - 2034
Alignment:
Q  24 ggaaggagcaagtgggagaaatagaggacattgagaggagagggctttggggg 76  Q
    ||||||||||||||| ||||||||| || | || |||| ||||||||||||||    
T  1982 ggaaggagcaagtggaagaaatagaagaaaatgggaggggagggctttggggg 2034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0373 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 8979 - 9023
Alignment:
Q  196 actctttcaaaaaatgtgtaagatttctcaaatttttcctatatt 240  Q
    |||||||||||||||||| |||| ||||||| ||| |||||||||    
T  8979 actctttcaaaaaatgtgaaagagttctcaattttctcctatatt 9023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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