View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_low_4 (Length: 513)
Name: NF7840_low_4
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_low_4 |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 105; Significance: 3e-52; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 359 - 495
Target Start/End: Original strand, 37958914 - 37959050
Alignment:
| Q |
359 |
ttctatatgattattcacttgataaatgtaatttgaaaattttagatattggactaagaaaggtatttgctgggcgagaaattcggaggttcaagatata |
458 |
Q |
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| T |
37958914 |
ttctatatgattactcacttgataaatgtaatttaaaatttatagatattggactaagaaaggtatttgctgggcgagaaattcagaggttcaagatata |
37959013 |
T |
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| Q |
459 |
aatgatacagcaatgggatttagaatcctaaggttgc |
495 |
Q |
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| T |
37959014 |
gacgacacagcaatgggatttagaatcctaaggttgc |
37959050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 132 - 282
Target Start/End: Original strand, 37958711 - 37958867
Alignment:
| Q |
132 |
aatgtctttcctgtggact-atatgaacacatgtgggttgtggatcggctcgaacgccttggaattttgagatattttcaacaagagatcagggagtctg |
230 |
Q |
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| T |
37958711 |
aatgtctttcctgtggacttatttgaacacatgtgggttgtggatcggctcgaacgccttggaattttgagatattttcaacaagagatcaaggagtgtg |
37958810 |
T |
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| Q |
231 |
tgaattatgtgtcaagg----tatatgataagtgga-ttacaatttacaaatagttg |
282 |
Q |
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| T |
37958811 |
tggattatgtgtcaaggtacataaatgataagttgatttacaatttgcaaatagttg |
37958867 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 164 - 221
Target Start/End: Original strand, 3229296 - 3229353
Alignment:
| Q |
164 |
tgggttgtggatcggctcgaacgccttggaattttgagatattttcaacaagagatca |
221 |
Q |
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| T |
3229296 |
tgggtggttgatcgccttgaacgccttggaatttcgcggtattttcaacaagagatca |
3229353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 173 - 249
Target Start/End: Complemental strand, 3182232 - 3182156
Alignment:
| Q |
173 |
gatcggctcgaacgccttggaattttgagatattttcaacaagagatcagggagtctgtgaattatgtgtcaaggta |
249 |
Q |
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| T |
3182232 |
gatcggctcgaacgccttgggatatctcgttattttcaacaagagatcaaagaatgtatgaattatgtttcaaggta |
3182156 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 359 - 495
Target Start/End: Complemental strand, 12635801 - 12635665
Alignment:
| Q |
359 |
ttctatatgattattcacttgataaatgtaatttgaaaattttagatattggactaagaaaggtatttgctgggcgagaaattcggaggttcaagatata |
458 |
Q |
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| T |
12635801 |
ttctatatgattattcacttgataaatgtaatttaatttttttagatattggattgagaaaggtatttgctgggcaagaaattcataggttcaagatata |
12635702 |
T |
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| Q |
459 |
aatgatacagcaatgggatttagaatcctaaggttgc |
495 |
Q |
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| T |
12635701 |
gatgacataacaatgggatttagactgcttaggttgc |
12635665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 153 - 249
Target Start/End: Complemental strand, 12635979 - 12635883
Alignment:
| Q |
153 |
atgaacacatgtgggttgtggatcggctcgaacgccttggaattttgagatattttcaacaagagatcagggagtctgtgaattatgtgtcaaggta |
249 |
Q |
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| T |
12635979 |
atgaacacatgtgggttctggatcgactagaacacctcggaatttctagatattttcgacaagagatcaaagaatcggtgaattatgtgtcaaggta |
12635883 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 440 - 495
Target Start/End: Complemental strand, 12894 - 12839
Alignment:
| Q |
440 |
ttcggaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgc |
495 |
Q |
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| T |
12894 |
ttcggaggttcaagatataaatgatacagcaatgggatttagaatcctaaggttgc |
12839 |
T |
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Target: chr4 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 17 - 128
Target Start/End: Original strand, 28523376 - 28523500
Alignment:
| Q |
17 |
aacaaaactctaggggtgtcggagtgtttacctcagtttattt------------taaattatataata-aacttatcgattaataaaatttgaagtatg |
103 |
Q |
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| T |
28523376 |
aacaaaactctaggggtgtcggagtgtttaccttaatttatttgtcatgcatgtttaaattatataatataacttatccattaataaaattagaagtgta |
28523475 |
T |
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| Q |
104 |
tgttttaatatgatgaaatagttat |
128 |
Q |
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| T |
28523476 |
tgttttaaaatgatgaaatatttat |
28523500 |
T |
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