View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_low_5 (Length: 481)
Name: NF7840_low_5
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 79 - 464
Target Start/End: Complemental strand, 35288924 - 35288543
Alignment:
| Q |
79 |
gaatacaacatatcactcttcttcaatacatagatttgatttactttaggttccttgtcgttaggaaacaaaatcttttagcaccaaaaatatctgaata |
178 |
Q |
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| T |
35288924 |
gaatacaacatatcactcttcttcaatatatagatttgatttactttaggttccttgtcgttaggaaacaaaatcttttagcaccaaaaatatctgaata |
35288825 |
T |
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| Q |
179 |
aacaatgtttctgttctgctaattttgaaggcttttgcgccgtttgcttttgcattagattgctgcaatgaatgtcatgtggatatggtatttgaaaact |
278 |
Q |
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| T |
35288824 |
aacaatgtttctgttctgctaattttgaaggcttttgcgccgtttgcttttgcattagattgctgcaatggatgtcatgtggatatggtatttgaaaact |
35288725 |
T |
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| Q |
279 |
aaacaaaaataaagccgcagaaatggaacaaaccttagcctgaaaaggtaaattaagctgattaaattattaattctacggtatatttttgacatacnnn |
378 |
Q |
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| T |
35288724 |
aaacaaaaataaagccgcagaaatggaacaaaccttagcctgaaaaggtaaattaagctgattaaattattaattctacggtatatttttgacatgcttt |
35288625 |
T |
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| Q |
379 |
nnnnggaaaataatgtttgaaacatccatacacccccttttatacactttgagaaagaaagaaataaaggaagtaatgtgatatat |
464 |
Q |
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| T |
35288624 |
ttttggaaaataatgtttg-aacatccatacaccccgtt---tacactttgagaaagaaagaaataatggaagtaatgtgatatat |
35288543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 35288956 - 35288915
Alignment:
| Q |
16 |
atatatgactagacgaagttgccactgttttggaatacaaca |
57 |
Q |
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| T |
35288956 |
atatatgactagacgaagttgccactgttttggaatacaaca |
35288915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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