View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_low_6 (Length: 451)
Name: NF7840_low_6
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 385; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 13 - 433
Target Start/End: Complemental strand, 9573712 - 9573292
Alignment:
| Q |
13 |
tgaattctgatttattcttttgattcacaacctaaacttaatatagtcaaccactttctctgtcatttgaaatatgtcttggatcttaaattattgaggt |
112 |
Q |
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| T |
9573712 |
tgaattctgatttattcttttgattcacaacctaaacttaatatagtcaaccactttctctgtcatttgaaatatgacttggatcttaaattattgaggt |
9573613 |
T |
|
| Q |
113 |
tcataaatgattatcaacttataattgtgtttttcaccnnnnnnnnacttgcaaatgatatttctattggttaacgatttgaatctcgacttgataacct |
212 |
Q |
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| T |
9573612 |
tcataaatgattatcaacttataattgtgtttttcaccttttttttacttgcaaatgatatttctattggttaacgatttgaatctcgacttgataacct |
9573513 |
T |
|
| Q |
213 |
tgatgtatttcgttgcagggcatcaaacctggttcccttagtaaggtgagtgaccctcaaattaaggactttattgagaaatgcctggttccagcatctg |
312 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9573512 |
tgatgtatttcgttgcagggtatcaaacctggttcccttagtaaggtgagtgaccctcaaattaaggactttattgagaaatgcctggttccagcatctg |
9573413 |
T |
|
| Q |
313 |
agagattgtccgcagaagagcttcttaaagacccatttctacaaattgagagtccaaagggtccattcctgactcctattaaaactctaacagctaccga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
9573412 |
agagattgtccgcagaagagcttcttaaagacccatttctacaaattgagagtccaaagggtccattcctgactcctattaaaactccaacagctaccga |
9573313 |
T |
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| Q |
413 |
tatgccaaagtcgggtactcc |
433 |
Q |
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| T |
9573312 |
tatgccaaagtcgggtactcc |
9573292 |
T |
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