View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7840_low_9 (Length: 379)
Name: NF7840_low_9
Description: NF7840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7840_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 41066894 - 41067253
Alignment:
| Q |
1 |
ttgagtaatccccataatttcaaggactaaaatgcctacgtactcttagaaatcacatggaacaaacaaataaacaacaaagatgttgaaaatacctata |
100 |
Q |
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|||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41066894 |
ttgactaatcctcataatttcaaggactaaaatgcctacgtactcttagaaatcacatggaacaaacaaataaacaacaaagatgttgaaaatacctata |
41066993 |
T |
|
| Q |
101 |
tctccttgtttagcagcaatatgaaatgcatcaaaaccgtttcttgctttaattccagcacaagcaagatcataatattgaatcattccccgaacgacat |
200 |
Q |
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| T |
41066994 |
tctccttgtttagcagcaatatgaaatgcatcaaaaccgtttcttgctttaattccagcacaagcaagatcataatattgaatcattccccgaacgacat |
41067093 |
T |
|
| Q |
201 |
caatataaccatactcagcagcaacataaagagctgtttctccatcttggttctgcctagccaataattcaagcaattcatcctcttgagcatcattaag |
300 |
Q |
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| T |
41067094 |
caatataaccatactcagcagcaacataaagagctgtttctccatcttggttctgcctagccaataattcaagcaattcatcctcttgagcatcattaag |
41067193 |
T |
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| Q |
301 |
aatatccctcacaacatctaaattccctgatcttgctgcagaatgcaaaggtgtatcatc |
360 |
Q |
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| T |
41067194 |
aatatccctcacaacatctaaattccctgatcttgctgcagaatgcaaaggtgtatcatc |
41067253 |
T |
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Back To:
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Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 91 - 256
Target Start/End: Original strand, 23033924 - 23034089
Alignment:
| Q |
91 |
aatacctatatctccttgtttagcagcaatatgaaatgcatcaaaaccgtttcttgctttaattccagcacaagcaagatcataatattgaatcattccc |
190 |
Q |
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|||||||| ||| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||| | |
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| T |
23033924 |
aatacctaaatccccttgtttagcagcaatatgaagtgcatcaaaaccatttcttgctttaattccagcatcagcaagatcataatactgaatcatctct |
23034023 |
T |
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| Q |
191 |
cgaacgacatcaatataaccatactcagcagcaacataaagagctgtttctccatcttggttctgc |
256 |
Q |
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| T |
23034024 |
ctaaccatatcaacataaccatactcagcagcaacataaagtgctgtttctccaccttgattctgc |
23034089 |
T |
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