View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7841_high_1 (Length: 495)

Name: NF7841_high_1
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7841_high_1
NF7841_high_1
[»] chr2 (2 HSPs)
chr2 (10-78)||(233262-233330)
chr2 (7-111)||(21629616-21629728)
[»] chr1 (1 HSPs)
chr1 (10-78)||(7392165-7392233)
[»] chr6 (11 HSPs)
chr6 (203-258)||(16573057-16573112)
chr6 (203-258)||(16874891-16874946)
chr6 (10-77)||(16874734-16874800)
chr6 (10-144)||(16572852-16572994)
chr6 (205-258)||(16581042-16581095)
chr6 (205-258)||(16614285-16614338)
chr6 (413-464)||(16581280-16581333)
chr6 (413-464)||(16614047-16614100)
chr6 (203-245)||(16991800-16991842)
chr6 (10-66)||(16580873-16580929)
chr6 (10-66)||(16614451-16614507)
[»] scaffold0256 (1 HSPs)
scaffold0256 (203-271)||(10626-10693)
[»] chr7 (1 HSPs)
chr7 (10-78)||(48298378-48298446)
[»] scaffold0133 (1 HSPs)
scaffold0133 (236-285)||(14507-14556)


Alignment Details
Target: chr2 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 233330 - 233262
Alignment:
Q  10 aattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtggtcggttggatc 78  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||  ||||| |||||||||    
T  233330 aattatctatccttgcagagagtaatgaaagagctacagaagcaaggttaggcggtggtgggttggatc 233262  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 7 - 111
Target Start/End: Original strand, 21629616 - 21629728
Alignment:
Q  7 aataattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtggtcggttggat--------cgctccttcaggtggaaagca 98  Q
    ||||| |||||||||| ||| ||| |||||||||||||||| ||||||||| |||   || ||||||||||        |||| |||||||||| | |||    
T  21629616 aataaatatctatccttgcaaagagtaatgaaagagctacataagcaaggtcaggcgatgatcggttggattacaataccgctgcttcaggtggcatgca 21629715  T
Q  99 tcaagacatgtcc 111  Q
    |||||||||||||    
T  21629716 tcaagacatgtcc 21629728  T

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Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 7392165 - 7392233
Alignment:
Q  10 aattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtggtcggttggatc 78  Q
    ||||||||||||| ||||||| ||||||||||||||||||||||||||||||  | ||| |||||||||    
T  7392165 aattatctatccttgcagagagtaatgaaagagctacagaagcaaggttaggcggcggtgggttggatc 7392233  T

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Target: chr6 (Bit Score: 44; Significance: 8e-16; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 16573057 - 16573112
Alignment:
Q  203 agtttattatgcacttcatttacggtatgtttgttttaagagggcttgaaactaga 258  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  16573057 agtttattatgcactccatttacgatatgtttgttttaagagagcttgaaactaga 16573112  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 203 - 258
Target Start/End: Original strand, 16874891 - 16874946
Alignment:
Q  203 agtttattatgcacttcatttacggtatgtttgttttaagagggcttgaaactaga 258  Q
    ||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||    
T  16874891 agtttattatgcactccatttacgatatgtttgttttaagagagcttgaaactaga 16874946  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 10 - 77
Target Start/End: Original strand, 16874734 - 16874800
Alignment:
Q  10 aattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtggtcggttggat 77  Q
    ||||||| ||||| ||  ||| |||||||||||||||||||||| ||||||||||| |||||||||||    
T  16874734 aattatccatccttgctaagagtaatgaaagagctacagaagcatggttaggaagt-gtcggttggat 16874800  T

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Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 144
Target Start/End: Original strand, 16572852 - 16572994
Alignment:
Q  10 aattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtggtcggttggat--------cgctccttcaggtggaaagcatca 101  Q
    ||||||| ||||| ||  ||| |||||||||||||||||||| | | |||||||||| || |||||||        ||||||||||||||| | || | |    
T  16572852 aattatccatccttgctaagagtaatgaaagagctacagaagtatgattaggaagtg-tcagttggattgcactgccgctccttcaggtggcaggcgtga 16572950  T
Q  102 agacatgtccc-ttctcaaaagcttagggaagtttgtgcttaac 144  Q
    ||||||||||  ||||||||||||| ||| ||||||||||||||    
T  16572951 agacatgtcctattctcaaaagcttgggggagtttgtgcttaac 16572994  T

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Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 258
Target Start/End: Original strand, 16581042 - 16581095
Alignment:
Q  205 tttattatgcacttcatttacggtatgtttgttttaagagggcttgaaactaga 258  Q
    ||||||||||||  |||||||| |||||||||||||||||  ||||||||||||    
T  16581042 tttattatgcaccccatttacgatatgtttgttttaagagaacttgaaactaga 16581095  T

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Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 205 - 258
Target Start/End: Complemental strand, 16614338 - 16614285
Alignment:
Q  205 tttattatgcacttcatttacggtatgtttgttttaagagggcttgaaactaga 258  Q
    ||||||||||||  |||||||| |||||||||||||||||  ||||||||||||    
T  16614338 tttattatgcaccccatttacgatatgtttgttttaagagaacttgaaactaga 16614285  T

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Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 464
Target Start/End: Original strand, 16581280 - 16581333
Alignment:
Q  413 tctaatcacatcctaacattctgtcaaa--acagtcagttttttggttattttg 464  Q
    ||||||||||||| ||||||||||||||  || |||||||| ||||||||||||    
T  16581280 tctaatcacatccaaacattctgtcaaaatactgtcagtttattggttattttg 16581333  T

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Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 464
Target Start/End: Complemental strand, 16614100 - 16614047
Alignment:
Q  413 tctaatcacatcctaacattctgtcaaa--acagtcagttttttggttattttg 464  Q
    ||||||||||||| ||||||||||||||  || |||||||| ||||||||||||    
T  16614100 tctaatcacatccaaacattctgtcaaaatactgtcagtttattggttattttg 16614047  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 16991842 - 16991800
Alignment:
Q  203 agtttattatgcacttcatttacggtatgtttgttttaagagg 245  Q
    |||||||||||||||||||  ||||||||||||| ||||||||    
T  16991842 agtttattatgcacttcatacacggtatgtttgtattaagagg 16991800  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Original strand, 16580873 - 16580929
Alignment:
Q  10 aattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtg 66  Q
    ||||||| ||||| ||  ||| || ||||||||||||||||||| ||||||||||||    
T  16580873 aattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtg 16580929  T

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Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 10 - 66
Target Start/End: Complemental strand, 16614507 - 16614451
Alignment:
Q  10 aattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtg 66  Q
    ||||||| ||||| ||  ||| || ||||||||||||||||||| ||||||||||||    
T  16614507 aattatccatccttgctaagagtagtgaaagagctacagaagcatggttaggaagtg 16614451  T

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Target: scaffold0256 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 203 - 271
Target Start/End: Complemental strand, 10693 - 10626
Alignment:
Q  203 agtttattatgcacttcatttacggtatgtttgttttaagagggcttgaaactagacatatattgtttc 271  Q
    |||||| ||||||||||||||||  ||||||| ||||| ||||||||||||||||||| ||||||||||    
T  10693 agtttactatgcacttcatttacattatgttt-ttttacgagggcttgaaactagacaaatattgtttc 10626  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 10 - 78
Target Start/End: Complemental strand, 48298446 - 48298378
Alignment:
Q  10 aattatctatcctagcagagaataatgaaagagctacagaagcaaggttaggaagtggtcggttggatc 78  Q
    ||||||||||||| ||||||| ||||||||||||| |||||||||| |||||  ||||| |||||||||    
T  48298446 aattatctatccttgcagagagtaatgaaagagcttcagaagcaagattaggtggtggtgggttggatc 48298378  T

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Target: scaffold0133 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0133
Description:

Target: scaffold0133; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 285
Target Start/End: Complemental strand, 14556 - 14507
Alignment:
Q  236 ttttaagagggcttgaaactagacatatattgtttccaccgcatcaactt 285  Q
    ||||| ||||||||||||||||||| |||||||||| | |||| ||||||    
T  14556 ttttacgagggcttgaaactagacaaatattgtttctatcgcaccaactt 14507  T

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