View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_high_10 (Length: 277)
Name: NF7841_high_10
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 50227671 - 50227929
Alignment:
| Q |
1 |
acgtcttcattccatgtttcctcattgtcacacagggatatcattcaacacctccaacgccagttctaaggtttcttctttatcacataaatcagcagnn |
100 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
50227671 |
acgtcttcattccacgtttcctcattgtcacacagggatatcattcaacacctccaacgccagttctaaggtttcttctttatcacataaaccagcagca |
50227770 |
T |
|
| Q |
101 |
nnnnnnttaacacaagacaaaggtggatacctcttattctcaattaattgctgccacatatactgcatgagcttctttaaacgttccgtctctacacaac |
200 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50227771 |
aaaaaattaacacaggacaaaggtggatacctcttattctcaattaattgctgccacatatactgcatgagcttctttaaacgttccgtctctacacaac |
50227870 |
T |
|
| Q |
201 |
caagacattattctacccattttttcgccatcaggaagtctgtgcagcaataatcttct |
259 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50227871 |
caagacattattctacccattttttcgccatcaggaagtctgtgcagcaataatcttct |
50227929 |
T |
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