View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_high_16 (Length: 238)
Name: NF7841_high_16
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 10 - 213
Target Start/End: Complemental strand, 25785169 - 25784967
Alignment:
| Q |
10 |
aagaatataacaactccagaagtggaccttctatcatcaggatatgatgatctgataccatattaaactaggagaaatagagagggaattttctaactaa |
109 |
Q |
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| T |
25785169 |
aagaatatgacagctccagaagtggacct-ctatcatcaggatatgatgatctgataccatattaaactaggaggaatagagagggaattttctaactaa |
25785071 |
T |
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| Q |
110 |
cttttatctcaattttaattcttttattgaatgaataattttgttacagacaactttatatatgaagttggggaatacttgcaatagcaggttgacctat |
209 |
Q |
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| T |
25785070 |
cttttatctcaattttgattcttttattgaatgaataattttgttacagacaactttatatatgaagttggggaatacttgcaatagcaggttgacctat |
25784971 |
T |
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| Q |
210 |
cttt |
213 |
Q |
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|||| |
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| T |
25784970 |
cttt |
25784967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 151 - 211
Target Start/End: Complemental strand, 25785712 - 25785652
Alignment:
| Q |
151 |
tgttacagacaactttatatatgaagttggggaatacttgcaatagcaggttgacctatct |
211 |
Q |
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| T |
25785712 |
tgttacagacagcttgatatatgaagctggggaatacctgctatagcaggttgacctatct |
25785652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 95 - 213
Target Start/End: Complemental strand, 37678585 - 37678466
Alignment:
| Q |
95 |
gaattttctaactaacttttatctcaattttaattcttttattgaatgaataattttgttacaga-caactttatatatgaagttggggaatacttgcaa |
193 |
Q |
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|||||||||||| |||||||||| ||| | | || || ||||||||||||||| ||||||| | || || ||||||||||| ||| |||||| ||||| |
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| T |
37678585 |
gaattttctaacaaacttttatcacaaatctcttttcttaattgaatgaataattctgttacaaaacagctatatatatgaagctggtgaatacctgcaa |
37678486 |
T |
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| Q |
194 |
tagcaggttgacctatcttt |
213 |
Q |
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| T |
37678485 |
tagcagattaacctatcttt |
37678466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 62 - 124
Target Start/End: Original strand, 3215717 - 3215779
Alignment:
| Q |
62 |
tgataccatattaaactaggagaaatagagagggaattttctaactaacttttatctcaattt |
124 |
Q |
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||||||||||| |||||| ||||||||| || |||| ||||||||||||||||||||||||| |
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| T |
3215717 |
tgataccatataaaactaaaagaaatagaaagagaatattctaactaacttttatctcaattt |
3215779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 151 - 217
Target Start/End: Original strand, 32456699 - 32456765
Alignment:
| Q |
151 |
tgttacagacaactttatatatgaagttggggaatacttgcaatagcaggttgacctatctttgact |
217 |
Q |
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|||||||||| || ||||||| || | |||||||||| ||| ||||||||||||||||||| ||||| |
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| T |
32456699 |
tgttacagactaccttatataagaggctggggaatacctgctatagcaggttgacctatctctgact |
32456765 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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