View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7841_high_17 (Length: 233)

Name: NF7841_high_17
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7841_high_17
NF7841_high_17
[»] chr5 (4 HSPs)
chr5 (15-214)||(36319927-36320126)
chr5 (20-185)||(36326383-36326551)
chr5 (87-198)||(19934865-19934973)
chr5 (77-194)||(28752663-28752780)
[»] chr2 (1 HSPs)
chr2 (31-198)||(28846328-28846495)
[»] scaffold0063 (1 HSPs)
scaffold0063 (86-196)||(65117-65227)
[»] chr3 (1 HSPs)
chr3 (51-175)||(26175279-26175402)
[»] chr8 (1 HSPs)
chr8 (92-198)||(552674-552780)
[»] chr7 (5 HSPs)
chr7 (36-126)||(11251447-11251537)
chr7 (36-126)||(11253951-11254041)
chr7 (36-126)||(11256456-11256546)
chr7 (36-126)||(11258962-11259052)
chr7 (39-126)||(11294472-11294559)
[»] chr4 (1 HSPs)
chr4 (92-159)||(36083815-36083882)


Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 36320126 - 36319927
Alignment:
Q  15 atatcaagtaaacagaaaactgcaggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaata 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36320126 atatcaagtaaacagaaaactgcaggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaata 36320027  T
Q  115 taaattatagaaaatataatttctgaccatttaagcaattagaacgaatcagaagtgtaaaataaaataatgtttaacaattgctaacacatgttgcttt 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36320026 taaattatagaaaatataatttctgaccatttaagcaattagaacgaatcagaagtgtaaaataaaataatgtttaacaattgctaacacatgttgcttt 36319927  T

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Target: chr5; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 20 - 185
Target Start/End: Complemental strand, 36326551 - 36326383
Alignment:
Q  20 aagtaaacagaaaactgcaggtaaatccgcgggaaattgattgattgattt---aaaattaataatgctcttcattgcattccaaaacgataaaaatata 116  Q
    |||||||||  ||||||||||||||||| | ||||||||||||||| ||||   ||||  || |||||||||||||||||||||||||||||||||||||    
T  36326551 aagtaaacaacaaactgcaggtaaatccacaggaaattgattgatttattttaaaaaaaaaaaaatgctcttcattgcattccaaaacgataaaaatata 36326452  T
Q  117 aattatagaaaatataatttctgaccatttaagcaattagaacgaatcagaagtgtaaaataaaataat 185  Q
    |||||||||||||| ||||||| ||||||||||||||||||||||||  |||||||  || ||||||||    
T  36326451 aattatagaaaatacaatttctaaccatttaagcaattagaacgaattggaagtgttgaacaaaataat 36326383  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 198
Target Start/End: Complemental strand, 19934973 - 19934865
Alignment:
Q  87 ttcattgcattccaaaacgataaaaatataaattatagaaaatataatttctgaccatttaagcaattagaacgaatcagaagtgtaaaataaaataatg 186  Q
    |||||||||||||||||| |||||||| ||||||||||   ||| |||||||  |||||| || ||||||||| |||  ||| ||||||| |||| ||||    
T  19934973 ttcattgcattccaaaacaataaaaatttaaattatag---atacaatttctatccatttcagaaattagaacaaattcgaaatgtaaaacaaaagaatg 19934877  T
Q  187 tttaacaattgc 198  Q
    || |||||||||    
T  19934876 ttcaacaattgc 19934865  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 77 - 194
Target Start/End: Original strand, 28752663 - 28752780
Alignment:
Q  77 aataatgctcttcattgcattccaaaacgataaaaatataaattatagaaaatataatttctgaccatttaagcaattagaacgaatcagaagtgtaaaa 176  Q
    |||| ||| ||||| |||||||||||||||||||||||||||| ||| || ||| ||||| | | ||||||||  |||| ||| ||| ||| ||||| |     
T  28752663 aatattgcacttcaatgcattccaaaacgataaaaatataaatcataaaagatacaatttataaacatttaagtgattaaaacaaattagatgtgtagat 28752762  T
Q  177 taaaataatgtttaacaa 194  Q
     | || ||||||||||||    
T  28752763 cataagaatgtttaacaa 28752780  T

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Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 31 - 198
Target Start/End: Original strand, 28846328 - 28846495
Alignment:
Q  31 aaactgcaggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaatataaattatagaaaata 130  Q
    |||||||||| ||||||||  |||||||||| |||  |  || | |||||||||   |||||||||| |||||||||||||||||||||||||||  |||    
T  28846328 aaactgcaggaaaatccgcatgaaattgatttatttttaaaagaataataatgcatctcattgcattacaaaacgataaaaatataaattatagacgata 28846427  T
Q  131 taatttctgaccatttaagcaattagaacgaatcagaagtgtaaaataaaataatgtttaacaattgc 198  Q
     |||||||  |||||| |||||||||||| |||  ||||||||||  |||| ||||||||||||||||    
T  28846428 caatttctatccatttcagcaattagaacaaattcgaagtgtaaaccaaaagaatgtttaacaattgc 28846495  T

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Target: scaffold0063 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 196
Target Start/End: Original strand, 65117 - 65227
Alignment:
Q  86 cttcattgcattccaaaacgataaaaatataaattatagaaaatataatttctgaccatttaagcaattagaacgaatcagaagtgtaaaataaaataat 185  Q
    |||||||||||||||||| |||||||||||||||||||||| ||| | |||||  |||||| |||||||||||| ||| ||||| |||||| |||| |||    
T  65117 cttcattgcattccaaaatgataaaaatataaattatagaagatacattttctatccatttcagcaattagaacaaattagaagcgtaaaacaaaagaat 65216  T
Q  186 gtttaacaatt 196  Q
    |||||||||||    
T  65217 gtttaacaatt 65227  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 26175402 - 26175279
Alignment:
Q  51 ggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaatataaattatagaaaatataatttctgaccatttaagc 150  Q
    ||||||||||| ||| |||| |||  ||||||||  |||| || |||||| |||||| ||||||||||||||| |  ||| |||||||  |||||| |||    
T  26175402 ggaaattgatttatttattttaaaa-aataatgcaattcaatgtattccagaacgatgaaaatataaattataaacgatacaatttctatccatttcagc 26175304  T
Q  151 aattagaacgaatcagaagtgtaaa 175  Q
    ||||||||| ||| |||||||||||    
T  26175303 aattagaacaaattagaagtgtaaa 26175279  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 552674 - 552780
Alignment:
Q  92 tgcattccaaaacgataaaaatataaattatagaaaatataatttctgaccatttaagcaattagaacgaatcagaagtgtaaaataaaataatgtttaa 191  Q
    ||||||| | |||||||||||||||||||||| || ||| | ||| | |  |||| |||||||||||| ||| ||| | ||| || ||||||||||||||    
T  552674 tgcattctagaacgataaaaatataaattataaaagatacagtttttaaatattttagcaattagaacaaattagatgagtagaacaaaataatgtttaa 552773  T
Q  192 caattgc 198  Q
    |||||||    
T  552774 caattgc 552780  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 11251447 - 11251537
Alignment:
Q  36 gcaggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaatataaattatagaa 126  Q
    ||||| |||||||| |||| | |||| ||  ||||||||  |||| |||| |||| ||||||||||||||||||||||||| |||||||||    
T  11251447 gcagggaaatccgcaggaagtcgattaatatatttaaaagaaatattgcttttcaatgcattccaaaacgataaaaatatagattatagaa 11251537  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 11253951 - 11254041
Alignment:
Q  36 gcaggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaatataaattatagaa 126  Q
    ||||| |||||||| |||| | |||| ||  ||||||||  |||| |||| |||| ||||||||||||||||||||||||| |||||||||    
T  11253951 gcagggaaatccgcaggaagtcgattaatatatttaaaagaaatattgcttttcaatgcattccaaaacgataaaaatatagattatagaa 11254041  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 11256456 - 11256546
Alignment:
Q  36 gcaggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaatataaattatagaa 126  Q
    ||||| |||||||| |||| | |||| ||  ||||||||  |||| |||| |||| ||||||||||||||||||||||||| |||||||||    
T  11256456 gcagggaaatccgcaggaagtcgattaatatatttaaaagaaatattgcttttcaatgcattccaaaacgataaaaatatagattatagaa 11256546  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 11258962 - 11259052
Alignment:
Q  36 gcaggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaatataaattatagaa 126  Q
    ||||| |||||||| |||| | |||| ||  ||||||||  |||| |||| |||| ||||||||||||||||||||||||| |||||||||    
T  11258962 gcagggaaatccgcaggaagtcgattaatatatttaaaagaaatattgcttttcaatgcattccaaaacgataaaaatatagattatagaa 11259052  T

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Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 126
Target Start/End: Original strand, 11294472 - 11294559
Alignment:
Q  39 ggtaaatccgcgggaaattgattgattgatttaaaattaataatgctcttcattgcattccaaaacgataaaaatataaattatagaa 126  Q
    ||||||||||| |||||| || | ||  ||| |||| ||||| |||| |||| ||||||||||||||||||||||||| |||| ||||    
T  11294472 ggtaaatccgcaggaaatcgactaatatattcaaaagtaatattgcttttcaatgcattccaaaacgataaaaatatagattacagaa 11294559  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 92 - 159
Target Start/End: Original strand, 36083815 - 36083882
Alignment:
Q  92 tgcattccaaaacgataaaaatataaattatagaaaatataatttctgaccatttaagcaattagaac 159  Q
    ||||||||| ||||||| ||||||||||||||||| ||| ||||| | | ||||||||||||| ||||    
T  36083815 tgcattccagaacgatataaatataaattatagaagatacaatttttaaacatttaagcaatttgaac 36083882  T

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