View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7841_low_10 (Length: 331)

Name: NF7841_low_10
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7841_low_10
NF7841_low_10
[»] chr4 (7 HSPs)
chr4 (182-314)||(54641021-54641153)
chr4 (208-314)||(54642416-54642522)
chr4 (18-103)||(54641250-54641335)
chr4 (26-102)||(54938074-54938149)
chr4 (29-73)||(54641620-54641664)
chr4 (250-304)||(22072494-22072549)
chr4 (277-306)||(45638744-45638773)
[»] chr1 (7 HSPs)
chr1 (208-304)||(16890177-16890273)
chr1 (26-102)||(10583719-10583795)
chr1 (26-102)||(49123075-49123151)
chr1 (208-264)||(34996546-34996602)
chr1 (250-304)||(17826244-17826299)
chr1 (47-102)||(23541321-23541376)
chr1 (260-304)||(30038143-30038187)
[»] chr8 (4 HSPs)
chr8 (210-304)||(21661114-21661209)
chr8 (246-304)||(5176631-5176689)
chr8 (245-302)||(20998684-20998742)
chr8 (245-302)||(21012621-21012679)
[»] chr7 (2 HSPs)
chr7 (26-102)||(6082221-6082297)
chr7 (26-102)||(13078360-13078436)
[»] chr3 (9 HSPs)
chr3 (26-102)||(39984048-39984124)
chr3 (227-304)||(8638906-8638983)
chr3 (35-102)||(35389071-35389138)
chr3 (260-314)||(41712285-41712340)
chr3 (38-102)||(2386599-2386663)
chr3 (246-304)||(8728609-8728668)
chr3 (246-304)||(9080496-9080555)
chr3 (246-304)||(42510600-42510657)
chr3 (270-304)||(54994703-54994737)
[»] chr2 (4 HSPs)
chr2 (26-102)||(14685386-14685462)
chr2 (26-102)||(40422210-40422286)
chr2 (26-102)||(21307242-21307314)
chr2 (269-303)||(13218776-13218810)
[»] scaffold0227 (1 HSPs)
scaffold0227 (26-101)||(12038-12113)
[»] chr6 (2 HSPs)
chr6 (26-102)||(18132106-18132182)
chr6 (270-304)||(21395676-21395710)
[»] chr5 (4 HSPs)
chr5 (35-102)||(29526368-29526435)
chr5 (26-96)||(39701944-39702014)
chr5 (270-304)||(29526123-29526157)
chr5 (260-304)||(37473585-37473629)
[»] scaffold0026 (1 HSPs)
scaffold0026 (38-102)||(80522-80586)
[»] scaffold0063 (1 HSPs)
scaffold0063 (275-304)||(33901-33930)


Alignment Details
Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 182 - 314
Target Start/End: Complemental strand, 54641153 - 54641021
Alignment:
Q  182 ggaacaggggaaatacttggggactggttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggag 281  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54641153 ggaacaggggaaatacttggggactggttgctggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggag 54641054  T
Q  282 agaccaagctctcgaattcttgggaacctattg 314  Q
    |||||||||||||||||||||||||||||||||    
T  54641053 agaccaagctctcgaattcttgggaacctattg 54641021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 208 - 314
Target Start/End: Complemental strand, 54642522 - 54642416
Alignment:
Q  208 gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgggaa 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  54642522 gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaacctctcgaattcttgggaa 54642423  T
Q  308 cctattg 314  Q
    |||||||    
T  54642422 cctattg 54642416  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 54641335 - 54641250
Alignment:
Q  18 acatcaccctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattctttt 103  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  54641335 acatcaccctgtcattatacttcaagttatgggaccctggtggacacttctgttatccctcaccttgaggacaaggtgattctttt 54641250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 54938149 - 54938074
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    |||||||||||||||| |||||||||||| |||| |||||| || ||||| |||||||||||| ||||||| |||||    
T  54938149 ctgtcattatacttca-gttatgggacccaggtggacacttatgatatccttcaccttgaggataaggtgaatcttt 54938074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 29 - 73
Target Start/End: Complemental strand, 54641664 - 54641620
Alignment:
Q  29 tcattatacttcaagttatgggaccctggtgcacacttctgttat 73  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||    
T  54641664 tcattatacttcaagttatgggaccctggtggacacttttgttat 54641620  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Original strand, 22072494 - 22072549
Alignment:
Q  250 cattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg 304  Q
    ||||||||| |||||||| |||||||| |||||||||||| |||||||||||||||    
T  22072494 cattttatttgggactggatattggtttgggagagaccaaactctcgaattcttgg 22072549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 45638773 - 45638744
Alignment:
Q  277 gggagagaccaagctctcgaattcttggga 306  Q
    ||||||||||||||||||||||||||||||    
T  45638773 gggagagaccaagctctcgaattcttggga 45638744  T

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Target: chr1 (Bit Score: 81; Significance: 4e-38; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 16890273 - 16890177
Alignment:
Q  208 gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg 304  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  16890273 gttactggataaataagggatcttaaggacaatgtcgataggcattttattggggactggttactggttgggagtgaccaagctcccgaattcttgg 16890177  T

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Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 10583719 - 10583795
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||    
T  10583719 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 10583795  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 49123075 - 49123151
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||    
T  49123075 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 49123151  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 208 - 264
Target Start/End: Original strand, 34996546 - 34996602
Alignment:
Q  208 gttactggataaataagggatctgaaggacaatgtcgataggcattttattggggac 264  Q
    |||||| |||||||| || |||||||||||||||||  |||||||||||||||||||    
T  34996546 gttactagataaatagggaatctgaaggacaatgtcagtaggcattttattggggac 34996602  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 250 - 304
Target Start/End: Complemental strand, 17826299 - 17826244
Alignment:
Q  250 cattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg 304  Q
    ||||||||| | |||||| |||||||| ||||||||||||||||||||||||||||    
T  17826299 cattttatttgagactggatattggtttgggagagaccaagctctcgaattcttgg 17826244  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 47 - 102
Target Start/End: Complemental strand, 23541376 - 23541321
Alignment:
Q  47 tgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||| |||||| |||||||| | ||||||||||||| |||| |||||    
T  23541376 tgggaccctggtggacacttatgttatcctttaccttgaggacaacgtgaatcttt 23541321  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 30038187 - 30038143
Alignment:
Q  260 gggactggttattggttgggagagaccaagctctcgaattcttgg 304  Q
    ||||||| |||||| |||||||||||||| |||| ||||||||||    
T  30038187 gggactgattattgattgggagagaccaaactcttgaattcttgg 30038143  T

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Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 210 - 304
Target Start/End: Original strand, 21661114 - 21661209
Alignment:
Q  210 tactggataaataagggatctgaaggacaatgtcgataggcattttatt-ggggactggttattggttgggagagaccaagctctcgaattcttgg 304  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||    
T  21661114 tactggataaataagggatctgaaggacaatgtcagtaggcattttattgggggactggttattgtttgggagagaccaagctctcgaattattgg 21661209  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 246 - 304
Target Start/End: Complemental strand, 5176689 - 5176631
Alignment:
Q  246 taggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg 304  Q
    ||||||||| ||| ||||| || ||||||||||||||||||||||||||||||||||||    
T  5176689 taggcatttcatttgggacaggatattggttgggagagaccaagctctcgaattcttgg 5176631  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Complemental strand, 20998742 - 20998684
Alignment:
Q  245 ataggcattttattg-gggactggttattggttgggagagaccaagctctcgaattctt 302  Q
    ||||||||||||||  |||||||| ||||| |||||||||||| |||||||||||||||    
T  20998742 ataggcattttattttgggactggatattgattgggagagaccgagctctcgaattctt 20998684  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 302
Target Start/End: Original strand, 21012621 - 21012679
Alignment:
Q  245 ataggcattttattg-gggactggttattggttgggagagaccaagctctcgaattctt 302  Q
    ||||||||||||||  |||||||| ||||| |||||||||||| |||||||||||||||    
T  21012621 ataggcattttattttgggactggatattgattgggagagaccgagctctcgaattctt 21012679  T

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Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 6082221 - 6082297
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| |||||    
T  6082221 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatcttt 6082297  T

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Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 13078360 - 13078436
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  13078360 ctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 13078436  T

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Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 39984124 - 39984048
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  39984124 ctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 39984048  T

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Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 227 - 304
Target Start/End: Original strand, 8638906 - 8638983
Alignment:
Q  227 atctgaaggacaatgtcgataggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg 304  Q
    ||||||||||||||| ||   | ||||||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  8638906 atctgaaggacaatggcggctgacattttattggggactggttattggttgggagagaacaagctctctaattcttgg 8638983  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 35 - 102
Target Start/End: Original strand, 35389071 - 35389138
Alignment:
Q  35 tacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||||||| ||||||| |||||| |||||||| ||| |||||||||||||||| |||||    
T  35389071 tacttcaagttatgggatcctggtggacacttatgttatccttcaacttgaggacaaggtgaatcttt 35389138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 41712340 - 41712285
Alignment:
Q  260 gggactggttattggttgggagagaccaagctctcgaa-ttcttgggaacctattg 314  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||    
T  41712340 gggactggttattgattgggagagaccaagctctcgaatttcttgggaacccattg 41712285  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 102
Target Start/End: Complemental strand, 2386663 - 2386599
Alignment:
Q  38 ttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||| ||||||||| |||||| |||||| || ||||| |||||||||||||||||||| |||||    
T  2386663 ttcaacttatgggactctggtggacacttatgctatccttcaccttgaggacaaggtgaatcttt 2386599  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 8728609 - 8728668
Alignment:
Q  246 taggcattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg 304  Q
    ||||||||||||| |||||||  |||||||| |||||||||||| |||||||||||||||    
T  8728609 taggcattttatttgggactgaatattggtttgggagagaccaaactctcgaattcttgg 8728668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 9080496 - 9080555
Alignment:
Q  246 taggcattttattggggactggttattggtt-gggagagaccaagctctcgaattcttgg 304  Q
    ||||||||||||| |||||||  |||||||| |||||||||||| |||||||||||||||    
T  9080496 taggcattttatttgggactgaatattggtttgggagagaccaaactctcgaattcttgg 9080555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 304
Target Start/End: Original strand, 42510600 - 42510657
Alignment:
Q  246 taggcattttattggggactggttattggttgggagagaccaagctctcgaattcttgg 304  Q
    ||||||||| ||| ||||| ||||||||||||||||| || | ||||||||||||||||    
T  42510600 taggcatttcatttgggacaggttattggttgggaga-acaatgctctcgaattcttgg 42510657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Original strand, 54994703 - 54994737
Alignment:
Q  270 attggttgggagagaccaagctctcgaattcttgg 304  Q
    |||||| ||||||||||||||||||||||||||||    
T  54994703 attggtagggagagaccaagctctcgaattcttgg 54994737  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 14685386 - 14685462
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  14685386 ctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 14685462  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 40422210 - 40422286
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||||||||||||||||||| |||| |||||| || ||||| |||||||||||||||||||| |||||    
T  40422210 ctgtcattatacttcaagttatgggacccaggtggacacttatgatatccttcaccttgaggacaaggtgaatcttt 40422286  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 26 - 102
Target Start/End: Original strand, 21307242 - 21307314
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||||||||||||||||||| |||| |||||| |    ||| |||||||||||||||||||| |||||    
T  21307242 ctgtcattatacttcaagttatgggacccaggtggacacttat----tccttcaccttgaggacaaggtgaatcttt 21307314  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 269 - 303
Target Start/End: Complemental strand, 13218810 - 13218776
Alignment:
Q  269 tattggttgggagagaccaagctctcgaattcttg 303  Q
    ||||| |||||||||||||||||||||||||||||    
T  13218810 tattgattgggagagaccaagctctcgaattcttg 13218776  T

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Target: scaffold0227 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 26 - 101
Target Start/End: Original strand, 12038 - 12113
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattctt 101  Q
    |||||| | ||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||| ||||    
T  12038 ctgtcactctacttcaagttatgggaccctggtggacacttatgttatccttcaccttgaggacaaggtgaatctt 12113  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 18132182 - 18132106
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    |||||| | ||||||||||||||||||||||||| |||||| | |||||| |||||||||||||||||||| |||||    
T  18132182 ctgtcactctacttcaagttatgggaccctggtggacacttattttatccttcaccttgaggacaaggtgaatcttt 18132106  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 21395710 - 21395676
Alignment:
Q  270 attggttgggagagaccaagctctcgaattcttgg 304  Q
    |||||| ||||||||||||||||||||||||||||    
T  21395710 attggtagggagagaccaagctctcgaattcttgg 21395676  T

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Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 35 - 102
Target Start/End: Complemental strand, 29526435 - 29526368
Alignment:
Q  35 tacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    ||||||||||||||||||||||||| |||||| ||| |||| |||||||||||||||||||| |||||    
T  29526435 tacttcaagttatgggaccctggtggacacttatgtcatccttcaccttgaggacaaggtgaatcttt 29526368  T

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Target: chr5; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 26 - 96
Target Start/End: Complemental strand, 39702014 - 39701944
Alignment:
Q  26 ctgtcattatacttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtga 96  Q
    |||||||| ||||||||||| ||||||||||||| |||||| | |||||| ||||||||||||||||||||    
T  39702014 ctgtcattgtacttcaagttttgggaccctggtggacacttatattatccttcaccttgaggacaaggtga 39701944  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 270 - 304
Target Start/End: Complemental strand, 29526157 - 29526123
Alignment:
Q  270 attggttgggagagaccaagctctcgaattcttgg 304  Q
    |||||| ||||||||||||||||||||||||||||    
T  29526157 attggtagggagagaccaagctctcgaattcttgg 29526123  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 37473585 - 37473629
Alignment:
Q  260 gggactggttattggttgggagagaccaagctctcgaattcttgg 304  Q
    |||||||| ||||| |||||||||||  |||||||||||||||||    
T  37473585 gggactggatattgattgggagagacagagctctcgaattcttgg 37473629  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 38 - 102
Target Start/End: Original strand, 80522 - 80586
Alignment:
Q  38 ttcaagttatgggaccctggtgcacacttctgttatccctcaccttgaggacaaggtgattcttt 102  Q
    |||||||||||||||| ||||| |||||| | || ||| |||||||||||||||||||| |||||    
T  80522 ttcaagttatgggaccatggtggacacttatcttgtccttcaccttgaggacaaggtgaatcttt 80586  T

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Target: scaffold0063 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0063
Description:

Target: scaffold0063; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 275 - 304
Target Start/End: Original strand, 33901 - 33930
Alignment:
Q  275 ttgggagagaccaagctctcgaattcttgg 304  Q
    ||||||||||||||||||||||||||||||    
T  33901 ttgggagagaccaagctctcgaattcttgg 33930  T

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