View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_low_13 (Length: 311)
Name: NF7841_low_13
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 296
Target Start/End: Original strand, 38644919 - 38645198
Alignment:
| Q |
17 |
agaaaatatgaagattcattagatattacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggc |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38644919 |
agaaaatatgaagattcattagatattacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggc |
38645018 |
T |
|
| Q |
117 |
tgcaactcaactatgcagcttgaaacaaaatggttagctaaagagtcatattctgtgattcaacgacttcagctcccatcagcaaaagatcaactaaact |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38645019 |
tgcaactcaactatgcagcttgaaacaaaatggttagctaaagagtcatattctgtgattcaacgacttcagctcccatcagcaaaagatcaactaaaca |
38645118 |
T |
|
| Q |
217 |
tgtctcttccattagctcttcttgaactgcattccaataagattcttcttccctcgaaacaaacacatttttgcggcctt |
296 |
Q |
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| T |
38645119 |
tgtctcttccattagctcttcttgaactgcattccaataagattcttcttccctcgaaacaaacacatttttgcggcctt |
38645198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 157 - 296
Target Start/End: Complemental strand, 38899445 - 38899306
Alignment:
| Q |
157 |
aagagtcatattctgtgattcaacgacttcagctcccatcagcaaaagatcaactaaacttgtctcttccattagctcttcttgaactgcattccaataa |
256 |
Q |
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||||||||| || ||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||| |
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| T |
38899445 |
aagagtcatgttttgtgattcagcagcttcagctcctatcagcaaaagatcaactaaacttgtctcttccattaactcttcttgaacttccttccaataa |
38899346 |
T |
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| Q |
257 |
gattcttcttccctcgaaacaaacacatttttgcggcctt |
296 |
Q |
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| T |
38899345 |
gaatctttttccctcgaaacaaacacattttcgcggcctt |
38899306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 18 - 160
Target Start/End: Complemental strand, 38657082 - 38656935
Alignment:
| Q |
18 |
gaaaatatgaagattcattagat-attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggc |
116 |
Q |
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|||||||||| || ||||||||| |||| |||||| ||||||||||||||||||||| |||||||| ||||||| ||||||| ||||||||||||||||| |
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| T |
38657082 |
gaaaatatgatgaatcattagattattatatcagtagatttagattgatgaagtctagaagtatgatcatgatctctgagta-gaattggttgaaatggc |
38656984 |
T |
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| Q |
117 |
tgca-----actcaactatgcagcttgaaacaaaatggttagctaaaga |
160 |
Q |
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|||| ||||||||||||| |||||||||| |||||||| ||||| |
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| T |
38656983 |
tgcagtatggctcaactatgcagtttgaaacaaagtggttagccaaaga |
38656935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 41 - 116
Target Start/End: Original strand, 16805848 - 16805923
Alignment:
| Q |
41 |
attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggc |
116 |
Q |
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||||||| ||||||||||||||||||||| ||| | |||| || ||||| ||| |||||| ||| ||||||||||| |
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| T |
16805848 |
attacattagttgatttagattgatgaaggctagatgtattacaatgattccttagtatgcattagttgaaatggc |
16805923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 122
Target Start/End: Original strand, 23955879 - 23955980
Alignment:
| Q |
22 |
atatgaagattcattagat-attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaattggttgaaatggctgca |
120 |
Q |
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|||||| || ||||||||| | ||||||| | ||||||| ||||| ||| ||| | |||| || ||||| ||||| ||||||||||| ||||||||||| |
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| T |
23955879 |
atatgacgaatcattagatgactacatcaatagatttaggttgattaaggctagatgtatcacaatgattcctgaacatgaattggtttaaatggctgca |
23955978 |
T |
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| Q |
121 |
ac |
122 |
Q |
| |
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|| |
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| T |
23955979 |
ac |
23955980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 22769061 - 22769149
Alignment:
| Q |
17 |
agaaaatatgaagattcattagat-attacatcagttgatttagattgatgaagtctaaaagtatgaccatgatccctgagtatgaatt |
104 |
Q |
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|||||| |||| || ||||||||| ||||||||||| ||||||||||||||||| ||| | | ||| ||||| |||||||||||||| |
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| T |
22769061 |
agaaaagatgatgaatcattagatgattacatcagtagatttagattgatgaaggctagatcaacgacaatgattcctgagtatgaatt |
22769149 |
T |
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