View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_low_14 (Length: 310)
Name: NF7841_low_14
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 141 - 296
Target Start/End: Original strand, 30164665 - 30164820
Alignment:
| Q |
141 |
tcatcactcatattataatatagtatgttcttagtcttatctcttcatatcctacgtgtgtgctctttttcacctaacatggacccttattggttgatgt |
240 |
Q |
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| T |
30164665 |
tcatcactcatattataatatagtatgttcttagtcttatctcttcatatcctacgtgtgtgctctttttcacctaacatggacccttattggttgatgt |
30164764 |
T |
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| Q |
241 |
cacgacttccagcatacaaagacagtggctggaattaattaaatattgttctgtgt |
296 |
Q |
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| T |
30164765 |
cacgacttccagcatacaaagacaatggctggaattaattaaatattgttctgtgt |
30164820 |
T |
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Target: chr4; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 99
Target Start/End: Original strand, 30164532 - 30164622
Alignment:
| Q |
9 |
agtgaaattgccaacttggtggaaactgtcatttgtgcttgtcttatgtcaattaggaaaacaatattttagatttgctatcataaactag |
99 |
Q |
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| T |
30164532 |
agtgtaattgccaacttggtggaaactgtcatttgtgcttgtcttatgtcaattaggaaaacaatattttagatttgctatcataaactag |
30164622 |
T |
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