View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7841_low_20 (Length: 260)

Name: NF7841_low_20
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7841_low_20
NF7841_low_20
[»] chr4 (3 HSPs)
chr4 (1-258)||(2888161-2888418)
chr4 (1-186)||(2896021-2896206)
chr4 (1-162)||(2878659-2878820)
[»] chr2 (3 HSPs)
chr2 (32-138)||(44222004-44222110)
chr2 (32-138)||(44232830-44232936)
chr2 (32-138)||(44209809-44209915)
[»] chr7 (8 HSPs)
chr7 (20-66)||(39339867-39339913)
chr7 (20-66)||(39354688-39354734)
chr7 (27-66)||(39563086-39563125)
chr7 (18-66)||(39573625-39573673)
chr7 (32-66)||(39367301-39367335)
chr7 (20-66)||(39546293-39546339)
chr7 (28-77)||(39620948-39620997)
chr7 (17-69)||(39588129-39588181)


Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 258
Target Start/End: Original strand, 2888161 - 2888418
Alignment:
Q  1 ctcacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcact 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2888161 ctcacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcact 2888260  T
Q  101 gttttcataggcttgatgtttggaacaatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2888261 gttttcataggcttgatgtttggaacaatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaactaaactattagag 2888360  T
Q  201 ttaagtcagcttttctttccaactcaagttctaacctcttttgttgatgtccatctca 258  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| || |||| ||||    
T  2888361 ttaagtcagcttttctttccaactcgagttctaacctcttttgttcatttccagctca 2888418  T

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Target: chr4; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 2896206 - 2896021
Alignment:
Q  1 ctcacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcact 100  Q
    ||||||||||||||   ||||||| ||||||||| |||||||||||||||||||||| |||||||| |||||||||||| ||||||||||||||||||||    
T  2896206 ctcacaatcattttggatccaatgcttggcttgcctatggaaacaacattggtcatactggcgcaatccgccatacactgctgtgaggtttttcttcact 2896107  T
Q  101 gttttcataggcttgatgtttggaacaatattttgggatcttggaaggaaatagtaagtgaactttcattatctgaaaaataagaa 186  Q
      ||||||||  ||||||||||||||||| || ||| | |||||||||||||||||||||||  |||||||| |||||||||||||    
T  2896106 actttcatagcattgatgtttggaacaatgttctggaaccttggaaggaaatagtaagtgaaacttcattatgtgaaaaataagaa 2896021  T

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Target: chr4; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 2878659 - 2878820
Alignment:
Q  1 ctcacaatcatttttagtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcact 100  Q
    |||||||||||||||||| ||||| ||||||||||| |||||||||| ||||||||||||||||||||||  ||||||| |||| ||||||| |||  ||    
T  2878659 ctcacaatcatttttagttcaatgcttggcttgcttgtggaaacaacgttggtcatattggcgcaacccgttatacactgctgttaggttttactttgct 2878758  T
Q  101 gttttcataggcttgatgtttggaacaatattttgggatcttggaaggaaatagtaagtgaa 162  Q
      ||||||||  ||||||||||||||||| |||||||| || ||| | ||||||||||||||    
T  2878759 actttcatagcattgatgtttggaacaatgttttgggacctcggacgcaaatagtaagtgaa 2878820  T

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Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 44222110 - 44222004
Alignment:
Q  32 tgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatat 131  Q
    |||||||||||||||| ||||||||||||||| || || ||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||| |    
T  44222110 tgcttatggaaacaacgttggtcatattggcgtaatccaccatacactgctgtgaggtttttcttcactaccttcataggcttgatgtttggaacaatgt 44222011  T
Q  132 tttggga 138  Q
    | |||||    
T  44222010 tctggga 44222004  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 44232936 - 44232830
Alignment:
Q  32 tgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatat 131  Q
    |||||||||||||||| ||||||||||||||| || || ||||||||| ||||||||||||||||||||   |||||||||||||||||||||||||| |    
T  44232936 tgcttatggaaacaacgttggtcatattggcgtaatccaccatacactgctgtgaggtttttcttcactacattcataggcttgatgtttggaacaatgt 44232837  T
Q  132 tttggga 138  Q
    | |||||    
T  44232836 tctggga 44232830  T

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Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 32 - 138
Target Start/End: Complemental strand, 44209915 - 44209809
Alignment:
Q  32 tgcttatggaaacaacattggtcatattggcgcaacccgccatacacttctgtgaggtttttcttcactgttttcataggcttgatgtttggaacaatat 131  Q
    |||||||||||||||| ||||||||||||||| || || ||||||||| |||||||||||||||||||    ||||||| |||||||||||||||||| |    
T  44209915 tgcttatggaaacaacgttggtcatattggcgtaatccaccatacactgctgtgaggtttttcttcacgacattcatagccttgatgtttggaacaatgt 44209816  T
Q  132 tttggga 138  Q
    | |||||    
T  44209815 tctggga 44209809  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 39339867 - 39339913
Alignment:
Q  20 caatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 66  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||    
T  39339867 caatgtatggcttgcttatggaaacaacattggtcttattggcgcaa 39339913  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 66
Target Start/End: Original strand, 39354688 - 39354734
Alignment:
Q  20 caatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 66  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||    
T  39354688 caatgtatggcttgcttatggaaacaacattggtcttattggcgcaa 39354734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 39563125 - 39563086
Alignment:
Q  27 tggcttgcttatggaaacaacattggtcatattggcgcaa 66  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  39563125 tggcttgcttatggaaacaacattggtcttattggcgcaa 39563086  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 66
Target Start/End: Complemental strand, 39573673 - 39573625
Alignment:
Q  18 tccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 66  Q
    |||||||| ||||||| |||||||||||||||||||| || ||||||||    
T  39573673 tccaatgtatggcttgtttatggaaacaacattggtcttactggcgcaa 39573625  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 66
Target Start/End: Original strand, 39367301 - 39367335
Alignment:
Q  32 tgcttatggaaacaacattggtcatattggcgcaa 66  Q
    ||||||||||||||||||||||| |||||||||||    
T  39367301 tgcttatggaaacaacattggtcttattggcgcaa 39367335  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 66
Target Start/End: Complemental strand, 39546339 - 39546293
Alignment:
Q  20 caatgtttggcttgcttatggaaacaacattggtcatattggcgcaa 66  Q
    |||||| ||||||| |||||||||||||||||||| || ||||||||    
T  39546339 caatgtatggcttgtttatggaaacaacattggtcttactggcgcaa 39546293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 39620997 - 39620948
Alignment:
Q  28 ggcttgcttatggaaacaacattggtcatattggcgcaacccgccataca 77  Q
    ||||||||||||||||||||||||||| || ||||| || |||| |||||    
T  39620997 ggcttgcttatggaaacaacattggtcttactggcggaatccgcgataca 39620948  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 69
Target Start/End: Complemental strand, 39588181 - 39588129
Alignment:
Q  17 gtccaatgtttggcttgcttatggaaacaacattggtcatattggcgcaaccc 69  Q
    ||||||| | || |||| |||||||||||||||||||| || |||||||||||    
T  39588181 gtccaatttatgacttgtttatggaaacaacattggtcttactggcgcaaccc 39588129  T

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