View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7841_low_21 (Length: 258)
Name: NF7841_low_21
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 2859311 - 2859553
Alignment:
| Q |
1 |
taaggaacagagcatgacataaagagttatgttcattatttt--agtatcatgattttcaagttgctttccacaagaaccagaaccataattgtggctac |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||| || |||| |||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
2859311 |
taaggaacagagcatgacataaagagttatgttctacatttagcagtataatagtttttaagttgctttccacaaagaccgcaaccataattgtggctac |
2859410 |
T |
|
| Q |
99 |
aacttaatgcttttcaagatctcaacaactacatcaaatccaccattgcatttgcatcaactatatctaactacaa-ttctagatatcaaatattgttgt |
197 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||| |
|
|
| T |
2859411 |
aatttaatgcttttcaagatctcaacaactacatcaaatccaccattgcatttgcatcagctatatctaaatacaatttctaaatatcaaatattgttgt |
2859510 |
T |
|
| Q |
198 |
acgaccacaattgtagtttaaaaacctagtttgtataacaaga |
240 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
2859511 |
acgatcacaattgtagtttaaaaacctagtttatataacaaga |
2859553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University