View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_low_25 (Length: 249)
Name: NF7841_low_25
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_25 |
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| [»] chr1 (1 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 10 - 249
Target Start/End: Complemental strand, 25785464 - 25785225
Alignment:
| Q |
10 |
aagaatatgcacaacaaataatttatttgccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattg |
109 |
Q |
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| T |
25785464 |
aagaatgtgcacaacaaataatttatttgccataacctttcctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattg |
25785365 |
T |
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| Q |
110 |
tgagtcaataaaacggcggactgattatcacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcag |
209 |
Q |
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| T |
25785364 |
tgagtcaataaaactacggactgattatcacagagaacaacaggataggagaatggaacagtaagctctttctgcaaggtctaaacccaaagaacatcag |
25785265 |
T |
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| Q |
210 |
cagtagcttgagctaaggccatgtattttgcctctttgct |
249 |
Q |
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| T |
25785264 |
cagtagcttgagctaaggccctgtattttgcctctgtgct |
25785225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 12 - 249
Target Start/End: Complemental strand, 20030950 - 20030715
Alignment:
| Q |
12 |
gaatatgcacaacaaataatttatttgccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtg |
111 |
Q |
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| T |
20030950 |
gaatatgcacaacagacaactgctttgccaggaccttttctctaacaaagaaagggtcaatctccatgtgttttgtccttgagtgtaaaataggattgtg |
20030851 |
T |
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| Q |
112 |
agtcaataaaacggcggactgattatcacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcagca |
211 |
Q |
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| T |
20030850 |
agccaataagactgctgactggttgtcacagagaataacaggagaggaaaaaggaacagtgagctc--tgagtaatgtctgaatccaaagagcatctgca |
20030753 |
T |
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| Q |
212 |
gtagcttgagctaaggccatgtattttgcctctttgct |
249 |
Q |
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| T |
20030752 |
gtggcttgagctaaggccctgtattctgcttctgtgct |
20030715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 12 - 225
Target Start/End: Original strand, 32456978 - 32457189
Alignment:
| Q |
12 |
gaatatgcacaacaaataatttatttgccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtg |
111 |
Q |
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| T |
32456978 |
gaatgtgcacaacagataattgctttgccaggaccttttctctaacaaagaaaaggtcaacctccatgtgttttgttcttgagtgtaaaataggattgtg |
32457077 |
T |
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| Q |
112 |
agtcaataaaacggcggactgattatcacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcagca |
211 |
Q |
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| T |
32457078 |
agccaataagactgctgactggttatcacagagaataacaggggaagaaaaagggacagtgagctc--tgagtaatgtctgaacccaaagagcatctgca |
32457175 |
T |
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| Q |
212 |
gtagcttgagctaa |
225 |
Q |
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| T |
32457176 |
gtggcttgagctaa |
32457189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 38 - 224
Target Start/End: Original strand, 3211986 - 3212172
Alignment:
| Q |
38 |
gccataaccttttctctaacaaagaagaggtcaatttccatgtgtttggtccttgagtgtaaaataggattgtgagtcaataaaacggcggactgattat |
137 |
Q |
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|||| ||||||||| || |||||||| |||||| ||||||| || |||||||| | |||||| || |||| |||| | || || || || ||||||| |
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| T |
3211986 |
gccaaaaccttttcccttacaaagaaaaggtcagtttccatatgcttggtcctggtgtgtaagatgagattatgagcaagtagtactgctgattgattat |
3212085 |
T |
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| Q |
138 |
cacaaagaacaacgggataggataatggaacaataagctcttttagcaaggtctgaacccaaagaacatcagcagtagcttgagcta |
224 |
Q |
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| T |
3212086 |
cacaaaaaatagtaggagaagaagatggaacagtgagttctttgagtaaagtctgaacccagagaacatcagcagtagcttgtgcta |
3212172 |
T |
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