View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7841_low_28 (Length: 212)

Name: NF7841_low_28
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7841_low_28
NF7841_low_28
[»] chr2 (4 HSPs)
chr2 (1-212)||(6756329-6756540)
chr2 (3-212)||(7125743-7125952)
chr2 (135-212)||(21812333-21812410)
chr2 (27-91)||(21812472-21812536)
[»] chr8 (1 HSPs)
chr8 (1-212)||(41011647-41011858)
[»] chr4 (2 HSPs)
chr4 (1-212)||(1808016-1808227)
chr4 (1-212)||(49348742-49348953)
[»] chr1 (3 HSPs)
chr1 (1-212)||(27525098-27525309)
chr1 (3-120)||(45951826-45951943)
chr1 (1-65)||(24136429-24136494)
[»] chr7 (3 HSPs)
chr7 (1-212)||(31076245-31076455)
chr7 (2-212)||(23109591-23109801)
chr7 (7-123)||(19915703-19915819)
[»] chr6 (1 HSPs)
chr6 (7-212)||(26880729-26880934)


Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 6756540 - 6756329
Alignment:
Q  1 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  6756540 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcgcaacttccgtccacattaagtttaaatttacccgatgggggagctttccatt 6756441  T
Q  101 tgaccttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6756440 tgaccttgcttctattattagctgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 6756341  T
Q  201 ccaagttttatc 212  Q
    ||||||||||||    
T  6756340 ccaagttttatc 6756329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 3 - 212
Target Start/End: Complemental strand, 7125952 - 7125743
Alignment:
Q  3 agcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatttg 102  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||| ||||||||||||||| ||||||||||||||    
T  7125952 agcgtctggaatcaatcctcctgaaccgatgacaccactttgatcacaacttccatccacattaagtttaaatttacccgatgggtgagctttccatttg 7125853  T
Q  103 accttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttcc 202  Q
    ||||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  7125852 accttgcttctattattaggtgcacatgaatcagttgtagataactaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactggctttcc 7125753  T
Q  203 aagttttatc 212  Q
    || |||||||    
T  7125752 aaattttatc 7125743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 135 - 212
Target Start/End: Original strand, 21812333 - 21812410
Alignment:
Q  135 agttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttccaagttttatc 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||||||||    
T  21812333 agttgtagataacaaaaccatatcctcaaccacgaggttaatttgtcggatcacatcgctggctttccaagttttatc 21812410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 27 - 91
Target Start/End: Complemental strand, 21812536 - 21812472
Alignment:
Q  27 accgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggag 91  Q
    |||||||||||||||||||||||||||| |||||||||||||||| |||||||| ||||||||||    
T  21812536 accgatgacaccactttggtcacaacttccgtccacattaagtttaaatttaccggatgggggag 21812472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 41011858 - 41011647
Alignment:
Q  1 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||    
T  41011858 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaacttccgtccatattaagtttaaatttacccgatgggggagctttccatt 41011759  T
Q  101 tgaccttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 200  Q
    |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41011758 tgaccttgcttctattattagctgcacatgaattagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 41011659  T
Q  201 ccaagttttatc 212  Q
    ||||||||||||    
T  41011658 ccaagttttatc 41011647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 212
Target Start/End: Original strand, 1808016 - 1808227
Alignment:
Q  1 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  1808016 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaacttccgtccacattaagtttaaatttacccgatgggggagctttccatt 1808115  T
Q  101 tgaccttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 200  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  1808116 tgaccttgcttctattattagctgcacatgaatcaattgtagataacaaaatcatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 1808215  T
Q  201 ccaagttttatc 212  Q
     |||||||||||    
T  1808216 tcaagttttatc 1808227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 49348953 - 49348742
Alignment:
Q  1 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatt 100  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||| |||||| |||||||||||||||||||||    
T  49348953 gtagcgtctcgaatcaatcctcatgaaccgataacaccactttggtcacaacttccgtccacattaactttaaatttatccgatgggggagctttccatt 49348854  T
Q  101 tgaccttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 200  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49348853 tgaccttgcttctattattagctgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 49348754  T
Q  201 ccaagttttatc 212  Q
    ||||||||||||    
T  49348753 ccaagttttatc 49348742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 184; Significance: 1e-100; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 27525309 - 27525098
Alignment:
Q  1 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||| ||||||||||||||||||||||||||||    
T  27525309 gtagcgtctcgaatcaatcctcccgaaccgatgacaccactttggtcacaacttccgtccacattaaatttaaatttacccgatgggggagctttccatt 27525210  T
Q  101 tgaccttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 200  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  27525209 tgaccttgcttctattattagctgcacatgaatcagttgtagataacaaaaccatatccttaaccatgaggttaatttgtcagatcacatcactagcttt 27525110  T
Q  201 ccaagttttatc 212  Q
    ||||||||||||    
T  27525109 ccaagttttatc 27525098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 3 - 120
Target Start/End: Original strand, 45951826 - 45951943
Alignment:
Q  3 agcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatttg 102  Q
    |||||||||||||||| | |||||||||||||||||| |||| ||||||||  | |||||||| ||||| ||||||  | ||||||||||||||||||||    
T  45951826 agcgtctcgaatcaattcacctgaaccgatgacaccagtttgatcacaactgccatccacattgagtttaaatttattcaatgggggagctttccatttg 45951925  T
Q  103 accttgcttctattatta 120  Q
    ||||||||| ||||||||    
T  45951926 accttgcttgtattatta 45951943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 24136429 - 24136494
Alignment:
Q  1 gtagcgtctcgaatcaa-tcctcctgaaccgatgacaccactttggtcacaactttcgtccacatt 65  Q
    ||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| | ||||||||    
T  24136429 gtagcatctcgaatcaaatcctcctgaaccgatgacacgactttggtcacaacttccatccacatt 24136494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 31076455 - 31076245
Alignment:
Q  1 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||| |||| |||||||||||||||||||||||    
T  31076455 gtagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaacttccatcctcattaagtttaaatt-acccgatgggggagctttccatt 31076357  T
Q  101 tgaccttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 200  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31076356 tgaccttgcttctattattagctgcacatgaatcaattgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagcttt 31076257  T
Q  201 ccaagttttatc 212  Q
    ||||||||||||    
T  31076256 ccaagttttatc 31076245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 179; E-Value: 9e-97
Query Start/End: Original strand, 2 - 212
Target Start/End: Complemental strand, 23109801 - 23109591
Alignment:
Q  2 tagcgtctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccattt 101  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||| | |||||||||||||| ||||||||||||||| |||||||||||||    
T  23109801 tagcgtctcgaatcaatcctcctgaaccgatgataccactttggtcacaacttccatccacattaagtttaaatttacccgatgggagagctttccattt 23109702  T
Q  102 gaccttgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttc 201  Q
    ||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  23109701 gaccttgcttctattattagctgcacatgtatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttt 23109602  T
Q  202 caagttttatc 212  Q
    |||||||||||    
T  23109601 caagttttatc 23109591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 6e-36
Query Start/End: Original strand, 7 - 123
Target Start/End: Complemental strand, 19915819 - 19915703
Alignment:
Q  7 tctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatttgacct 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||| | ||||||  |||| |||||||||||||||| ||    
T  19915819 tctcgaatcaatcctcctgaaccgatgacaccactttggtcacaacttccatccacattgagtttaactttaccgaatggaggagctttccatttgatct 19915720  T
Q  107 tgcttctattattaact 123  Q
    || ||||||||||||||    
T  19915719 tgattctattattaact 19915703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 122; Significance: 9e-63; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 122; E-Value: 9e-63
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 26880934 - 26880729
Alignment:
Q  7 tctcgaatcaatcctcctgaaccgatgacaccactttggtcacaactttcgtccacattaagtttcaatttacccgatgggggagctttccatttgacct 106  Q
    |||||||| |||||||||||||||||||||||| |||| |||||| |  | |||||||| |||||  |||||||| ||||||||||||||||||||| ||    
T  26880934 tctcgaattaatcctcctgaaccgatgacaccagtttgatcacaaatgccatccacattgagtttatatttacccaatgggggagctttccatttgatct 26880835  T
Q  107 tgcttctattattaactgcacatgaatcagttgtagataacaaaaccatatcctcaaccatgaggttaatttgtcggatcacatcactagctttccaagt 206  Q
    || ||||||||||| |||||||||||||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||| ||| || |||||||||||    
T  26880834 tgattctattattatctgcacatgaatcagttgtagacaacaaagccatatccttaaccattaggttaatttgtcggatcatatcgctggctttccaagt 26880735  T
Q  207 tttatc 212  Q
    ||||||    
T  26880734 tttatc 26880729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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