View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_low_29 (Length: 207)
Name: NF7841_low_29
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 166
Target Start/End: Original strand, 26466913 - 26467064
Alignment:
| Q |
15 |
cagagaataataataacaataagtaagattgtttatgataaaaataaaatgcatgtaataatttggaaataagaaagagagtagagaaaacgaacgaacc |
114 |
Q |
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| T |
26466913 |
cagagaataataataacaataagtaagattgtttatgataaaaataaaatgcatgtaataatttggaaataaggaagagagtagagaaaacgaacgaacc |
26467012 |
T |
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| Q |
115 |
tgccaagcagattcgatgatgaacgccatagcgagagcagaggagagaaaag |
166 |
Q |
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| T |
26467013 |
tgccaagcagattcgatgatgaacgccatagcgagagcagaggagagaaaag |
26467064 |
T |
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Target: chr6 (Bit Score: 50; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 110 - 190
Target Start/End: Original strand, 14370815 - 14370893
Alignment:
| Q |
110 |
gaacctgccaagcagattcgatgatgaacgccatagcgagagcagaggagagaaaagtgccactgccaagtcacactgagt |
190 |
Q |
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| T |
14370815 |
gaacctgccatgcagattcgatgatgaacggcatagcgagaggataggagag--aagtgccactgccaagttacactgagt |
14370893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 94
Target Start/End: Original strand, 14370774 - 14370816
Alignment:
| Q |
52 |
ataaaaataaaatgcatgtaataatttggaaataagaaagaga |
94 |
Q |
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| T |
14370774 |
ataaaaataaaatgcatgtagtgatttggaaataaggaagaga |
14370816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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