View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7841_low_3 (Length: 439)

Name: NF7841_low_3
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7841_low_3
NF7841_low_3
[»] chr4 (2 HSPs)
chr4 (306-426)||(27316307-27316428)
chr4 (259-299)||(6509856-6509896)
[»] chr3 (3 HSPs)
chr3 (223-305)||(28424311-28424393)
chr3 (102-168)||(28424448-28424513)
chr3 (259-306)||(45807043-45807090)
[»] chr8 (2 HSPs)
chr8 (223-304)||(23388234-23388315)
chr8 (102-168)||(23388367-23388433)
[»] chr7 (2 HSPs)
chr7 (227-306)||(42840750-42840830)
chr7 (259-299)||(40740666-40740706)
[»] scaffold0380 (1 HSPs)
scaffold0380 (259-298)||(6112-6151)
[»] chr5 (1 HSPs)
chr5 (259-306)||(10021004-10021051)
[»] chr1 (4 HSPs)
chr1 (259-305)||(17050398-17050444)
chr1 (259-305)||(51606914-51606960)
chr1 (259-291)||(38688643-38688675)
chr1 (259-291)||(49420098-49420130)
[»] chr2 (1 HSPs)
chr2 (272-308)||(44094086-44094122)


Alignment Details
Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 306 - 426
Target Start/End: Complemental strand, 27316428 - 27316307
Alignment:
Q  306 tatgtttaatcctatttatctttgatgatgtatttacttaccataagtaactaatattcttagataaggattgaatgatggtcctctgcat-aattgttt 404  Q
    |||||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||| |||||||||||||| |||||||||| ||||||||    
T  27316428 tatgtttaatcctatttatctttgatcatgtatttacatactataagtaactaatattcttagattaggattgaatgatgatcctctgcataaattgttt 27316329  T
Q  405 gcaacatgtgatcgtgatgtcc 426  Q
    ||||||||||||||||| ||||    
T  27316328 gcaacatgtgatcgtgaagtcc 27316307  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Original strand, 6509856 - 6509896
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttcccaggctaaac 299  Q
    ||||||||  |||||| ||||||||||||||||||||||||    
T  6509856 tttcccatgctgggaagcaactttgctttcccaggctaaac 6509896  T

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Target: chr3 (Bit Score: 79; Significance: 9e-37; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 28424393 - 28424311
Alignment:
Q  223 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 305  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28424393 caggtcatgactgccagctgcaggtaaaaagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 28424311  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 28424513 - 28424448
Alignment:
Q  102 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 168  Q
    ||||| ||||||||||| ||||||| ||||| || | |||||||||||||| |||||||||||||||    
T  28424513 aacagcgtgcaattggagtaggattatgaca-caaatgagtcatttgttctctgagaatgcaaagtc 28424448  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Original strand, 45807043 - 45807090
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 306  Q
    ||||||||||| |||||||||||||||||||||  |||||| ||||||    
T  45807043 tttcccatcataggaaacaactttgctttcccattctaaaccccacct 45807090  T

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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 23388315 - 23388234
Alignment:
Q  223 caggtcatgactgccagctgcaggtaaagagcaaagtttcccatcatgggaaacaactttgctttcccaggctaaacgccac 304  Q
    ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  23388315 caggtcaggactgccagctgcaggtaaaaagcaaattttcccatcatgggaaacaactttgctttcccaggctaaacgccac 23388234  T

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Target: chr8; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 102 - 168
Target Start/End: Complemental strand, 23388433 - 23388367
Alignment:
Q  102 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctttgagaatgcaaagtc 168  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  23388433 aacagtgtgcaattggattaggattgtgacaacagacgagtcatttgttctcttagaatgcaaagtc 23388367  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 306
Target Start/End: Complemental strand, 42840830 - 42840750
Alignment:
Q  227 tcatgactgccagctgcaggtaaagagcaaagtttcccatcatg-ggaaacaactttgctttcccaggctaaacgccacct 306  Q
    |||||||||||| ||| ||||||| |||||||||||||||||||   |||||||||| ||||||| | || ||||||||||    
T  42840830 tcatgactgccaactggaggtaaaaagcaaagtttcccatcatgaaaaaacaactttactttccccgacttaacgccacct 42840750  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 299
Target Start/End: Complemental strand, 40740706 - 40740666
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttcccaggctaaac 299  Q
    |||||||||||||||||||| ||| |||||||| |||||||    
T  40740706 tttcccatcatgggaaacaattttcctttcccatgctaaac 40740666  T

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Target: scaffold0380 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Original strand, 6112 - 6151
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttcccaggctaaa 298  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  6112 tttcccatcatgggaaacaactttggtttcccaggctaaa 6151  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 259 - 306
Target Start/End: Complemental strand, 10021051 - 10021004
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacct 306  Q
    |||||||||||||||||| | |||| |||||||||||||||| |||||    
T  10021051 tttcccatcatgggaaactagtttgttttcccaggctaaacggcacct 10021004  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Original strand, 17050398 - 17050444
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 305  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||    
T  17050398 tttcccatcatgggaaacaactttcatttcccaagctaaactccacc 17050444  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 259 - 305
Target Start/End: Complemental strand, 51606960 - 51606914
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttcccaggctaaacgccacc 305  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||    
T  51606960 tttcccatcatgggaaacaactttccttgcccatgctaaactccacc 51606914  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Original strand, 38688643 - 38688675
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttccca 291  Q
    |||||||||||||||||||||||| ||||||||    
T  38688643 tttcccatcatgggaaacaacttttctttccca 38688675  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 259 - 291
Target Start/End: Complemental strand, 49420130 - 49420098
Alignment:
Q  259 tttcccatcatgggaaacaactttgctttccca 291  Q
    |||||||||||||||||||||||| ||||||||    
T  49420130 tttcccatcatgggaaacaactttcctttccca 49420098  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 272 - 308
Target Start/End: Complemental strand, 44094122 - 44094086
Alignment:
Q  272 gaaacaactttgctttcccaggctaaacgccacctat 308  Q
    |||||||||||| |||||||||||||| |||||||||    
T  44094122 gaaacaactttgatttcccaggctaaatgccacctat 44094086  T

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