View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7841_low_5 (Length: 434)
Name: NF7841_low_5
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 309; Significance: 1e-174; HSPs: 12)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 39355695 - 39356017
Alignment:
| Q |
13 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
112 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39355695 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
39355794 |
T |
|
| Q |
113 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39355795 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcg |
39355894 |
T |
|
| Q |
213 |
gatttttctttttgtataggagttccatctaaagaagaaaatatcccacaacc---attatattttctttattactaattaaatattgtatcatagctcg |
309 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39355895 |
gatttttctttttgtataggagttccatctaaagaagaaaatatcccacaaccattattatattttctttattactaattaaatattgtatcatagctcg |
39355994 |
T |
|
| Q |
310 |
agattggatagtctaagtgacat |
332 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
39355995 |
agattggatagtctaagtgacat |
39356017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 332
Target Start/End: Original strand, 39340887 - 39341209
Alignment:
| Q |
13 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
112 |
Q |
| |
|
||||||||||| ||||| ||||||||||| ||| ||||||||| ||||| |||||||||||||||||||| |||||||||||||||| |||||||||||| |
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| T |
39340887 |
aatatggagatttaaaaaaaaacattgaatccaatgatggaagccaaaccgtggaagaatttttgagaaactactttggtttcaagcctgattttctagg |
39340986 |
T |
|
| Q |
113 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
39340987 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgttttccatagcaattaagatgtttaatttccaaaggcgttaagaacattcg |
39341086 |
T |
|
| Q |
213 |
gatttttctttttgtataggagttccatctaaagaagaaaatatcccacaacc---attatattttctttattactaattaaatattgtatcatagctcg |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
39341087 |
gatttttctttttgtataggagttccatctaaagaagaaaatatcccacaaccattattatattttctttattactaattaaatattgtatcatagttcg |
39341186 |
T |
|
| Q |
310 |
agattggatagtctaagtgacat |
332 |
Q |
| |
|
||||| |||| |||||||||||| |
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|
| T |
39341187 |
agattagataatctaagtgacat |
39341209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 13 - 262
Target Start/End: Complemental strand, 39545215 - 39544966
Alignment:
| Q |
13 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
112 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| |||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
39545215 |
aatatggagatttaaaacaaaacattgaaaccagtgatagaagccaaacagtgaaagattttctgagaaattactttggtttcaagcatgattttctagg |
39545116 |
T |
|
| Q |
113 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcg |
212 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39545115 |
aatggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattc- |
39545017 |
T |
|
| Q |
213 |
gatttttc-tttttgtataggagttccatctaaagaagaaaatatcccaca |
262 |
Q |
| |
|
||||| | ||||||||||||| |||||||||||||| ||||||||||||| |
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|
| T |
39545016 |
aattttacatttttgtataggaattccatctaaagaataaaatatcccaca |
39544966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 39527380 - 39527177
Alignment:
| Q |
13 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39527380 |
aatatggagatgtaaaacaaaacattgaaactagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctagg |
39527281 |
T |
|
| Q |
113 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcg |
212 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39527280 |
aatggttgctcttgtcaatgttgcatgtccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaagccgttaagaacattca |
39527181 |
T |
|
| Q |
213 |
gatt |
216 |
Q |
| |
|
|||| |
|
|
| T |
39527180 |
gatt |
39527177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 13 - 252
Target Start/End: Complemental strand, 39535853 - 39535613
Alignment:
| Q |
13 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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| T |
39535853 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctagg |
39535754 |
T |
|
| Q |
113 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattcg |
212 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| |||||| || ||||||||||||| |||||||||||||| ||||||||||| |
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|
| T |
39535753 |
agtggttgctcttgtcaatgttgcatttccaatagtttttgctttggtctttgccttatcaatcaagatgttcaatttccaaaggcgataagaacattca |
39535654 |
T |
|
| Q |
213 |
gatttttc-tttttgtataggagttccatctaaagaagaaa |
252 |
Q |
| |
|
||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
39535653 |
attttaacttttttgtataggaattccatctaaagaagaaa |
39535613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 39368440 - 39368638
Alignment:
| Q |
13 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |
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|
| T |
39368440 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagattttctgagaaattactttggtttcaagcatgattttctagg |
39368539 |
T |
|
| Q |
113 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattc |
211 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
39368540 |
agtggttgctcttgtcaatattgcatttccaatagtttttgctttggtctttgccatagcaatcaagatgtttaatttccaaaggcgttgagaacattc |
39368638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 13 - 211
Target Start/End: Complemental strand, 39562047 - 39561849
Alignment:
| Q |
13 |
aatatggagatgtaaaacaaaacattgaaaccagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctagg |
112 |
Q |
| |
|
|||||||||||| ||| || |||||||||||||||||||||||||||||||| |||| ||| ||| ||| ||||||| ||||||||||||||||||||| |
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|
| T |
39562047 |
aatatggagatgaaaagcacaacattgaaaccagtgatggaagacaaacagtagaaggttttctgaaaaactactttgatttcaagcatgattttctagg |
39561948 |
T |
|
| Q |
113 |
agtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattc |
211 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39561947 |
agtggttgctcttgttaatgttgcatttccaataggttttgctttggtctttgccatatcaatcaagatgtttaatttccaaaggcgctaagaacattc |
39561849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 44 - 211
Target Start/End: Original strand, 39341681 - 39341848
Alignment:
| Q |
44 |
cagtgatggaagacaaacagtggaagaatttttgagaaattactttggtttcaagcatgattttctaggagtggttgctcttgtcaatgttgcatttcca |
143 |
Q |
| |
|
||||| |||||| ||||| ||||||| ||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
39341681 |
cagtgttggaagccaaactgtggaaggttttctgagaaattactttggtttcaagaatgattttctaggagtagttgctcttgtcaatgttgcatttcca |
39341780 |
T |
|
| Q |
144 |
atagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcgttaagaacattc |
211 |
Q |
| |
|
|||| ||||||||| | ||| | ||| |||| |||||||||| |||||||||||||||||||||||| |
|
|
| T |
39341781 |
atagtttttgctttgttttttcctatatcaataaagatgtttagtttccaaaggcgttaagaacattc |
39341848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 100 - 253
Target Start/End: Complemental strand, 1082404 - 1082251
Alignment:
| Q |
100 |
atgattttctaggagtggttgctcttgtcaatgttgcatttccaatagcatttgctttggtgtttgccatagcaatcaagatgtttaatttccaaaggcg |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
1082404 |
atgattttctaggagtggttgctcttgtcaatgttgcattttcaatagcttttgctttggtctttgccatatcaatcaagatgtttaattttcaaaggcg |
1082305 |
T |
|
| Q |
200 |
ttaagaacattcggatttttc-tttttgtataggagttccatctaaagaagaaaa |
253 |
Q |
| |
|
|||||| | ||| ||||| | |||||||||| || |||||||||||| |||||| |
|
|
| T |
1082304 |
ttaagagcgttc-aattttacttttttgtatatgaattccatctaaaggagaaaa |
1082251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 86; E-Value: 6e-41
Query Start/End: Original strand, 329 - 418
Target Start/End: Original strand, 39356040 - 39356129
Alignment:
| Q |
329 |
acatatgaaattaggatctttagtttggtaaaaatatggtatgctgcatattttcactagggctttgttatcatgtctgcctgttgatct |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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|
| T |
39356040 |
acatatgaaattaggatctttagtttggtaaaaatatggtatgctgcatattttcacaagggctttgttatcatgtctgcctgttgatct |
39356129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 291 - 332
Target Start/End: Original strand, 39341878 - 39341919
Alignment:
| Q |
291 |
aatattgtatcatagctcgagattggatagtctaagtgacat |
332 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39341878 |
aatattgtatcatagctcgagattggatagtctaagtgacat |
39341919 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 332 - 421
Target Start/End: Original strand, 39368775 - 39368867
Alignment:
| Q |
332 |
tatgaaattaggatctttagtttggtaaaaatatggtatgc---tgcatattttcactagggctttgttatcatgtctgcctgttgatcttga |
421 |
Q |
| |
|
||||| |||||||||||||||||| |||||||||| ||||| || |||||||||| ||| |||||||| ||||| || | | ||||||||| |
|
|
| T |
39368775 |
tatgagattaggatctttagtttgttaaaaatatgctatgctcgtgtatattttcacaaggtctttgttagcatgtttgtccgatgatcttga |
39368867 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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