View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7841_low_6 (Length: 414)

Name: NF7841_low_6
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7841_low_6
NF7841_low_6
[»] chr5 (15 HSPs)
chr5 (267-408)||(13380706-13380847)
chr5 (18-204)||(13380447-13380632)
chr5 (70-116)||(39572822-39572868)
chr5 (70-115)||(8742014-8742059)
chr5 (70-110)||(5837558-5837598)
chr5 (70-104)||(13956483-13956517)
chr5 (70-104)||(25501064-25501098)
chr5 (70-115)||(10237417-10237462)
chr5 (70-115)||(19119862-19119907)
chr5 (70-115)||(22616497-22616542)
chr5 (70-115)||(26268077-26268122)
chr5 (70-115)||(27318614-27318659)
chr5 (70-102)||(12164929-12164961)
chr5 (70-110)||(14409458-14409498)
chr5 (307-351)||(33752736-33752780)
[»] chr4 (16 HSPs)
chr4 (267-351)||(28292999-28293083)
chr4 (70-116)||(55241266-55241312)
chr4 (70-151)||(20097455-20097536)
chr4 (70-123)||(38812252-38812305)
chr4 (70-189)||(51204582-51204701)
chr4 (70-197)||(9743591-9743714)
chr4 (70-115)||(27396619-27396664)
chr4 (70-110)||(28003154-28003194)
chr4 (70-102)||(49375969-49376001)
chr4 (70-117)||(38811816-38811863)
chr4 (70-115)||(2266856-2266901)
chr4 (70-115)||(33341398-33341443)
chr4 (70-115)||(35021198-35021243)
chr4 (70-115)||(47253752-47253797)
chr4 (70-102)||(28293250-28293282)
chr4 (70-110)||(38011857-38011897)
[»] scaffold0262 (1 HSPs)
scaffold0262 (267-346)||(11928-12007)
[»] chr3 (17 HSPs)
chr3 (70-189)||(40640564-40640679)
chr3 (70-104)||(53811987-53812021)
chr3 (70-115)||(32180747-32180792)
chr3 (70-105)||(18272233-18272268)
chr3 (70-153)||(42204345-42204428)
chr3 (70-104)||(4015454-4015488)
chr3 (70-116)||(52041059-52041105)
chr3 (70-115)||(7327620-7327665)
chr3 (70-115)||(21193600-21193645)
chr3 (70-115)||(35844320-35844365)
chr3 (70-115)||(46297899-46297944)
chr3 (70-115)||(51213118-51213163)
chr3 (70-123)||(53818501-53818554)
chr3 (70-110)||(4556543-4556583)
chr3 (70-102)||(22446215-22446247)
chr3 (70-110)||(22450962-22451002)
chr3 (70-102)||(40552409-40552441)
[»] chr1 (12 HSPs)
chr1 (70-110)||(31621690-31621730)
chr1 (70-115)||(43579245-43579290)
chr1 (70-115)||(1547286-1547331)
chr1 (70-115)||(16415644-16415689)
chr1 (70-115)||(39393382-39393427)
chr1 (70-110)||(14758040-14758080)
chr1 (70-104)||(38823213-38823247)
chr1 (70-115)||(15752028-15752073)
chr1 (70-115)||(42663785-42663830)
chr1 (70-110)||(4150492-4150532)
chr1 (132-196)||(15964161-15964225)
chr1 (70-110)||(33725737-33725777)
[»] chr2 (10 HSPs)
chr2 (89-204)||(45414311-45414426)
chr2 (70-116)||(36641989-36642035)
chr2 (70-115)||(33551141-33551186)
chr2 (345-408)||(44596071-44596134)
chr2 (70-115)||(6177778-6177823)
chr2 (70-115)||(41465512-41465557)
chr2 (70-115)||(13711467-13711512)
chr2 (70-115)||(19313855-19313900)
chr2 (70-110)||(39788582-39788622)
chr2 (70-102)||(43446475-43446507)
[»] chr7 (15 HSPs)
chr7 (70-115)||(5657619-5657664)
chr7 (83-189)||(37854224-37854326)
chr7 (70-123)||(3953734-3953787)
chr7 (70-151)||(19786283-19786364)
chr7 (70-115)||(40381943-40381988)
chr7 (70-117)||(10359350-10359397)
chr7 (70-109)||(26524471-26524510)
chr7 (70-104)||(8861263-8861297)
chr7 (70-115)||(6546497-6546542)
chr7 (70-115)||(10675332-10675377)
chr7 (70-115)||(18797307-18797352)
chr7 (70-115)||(23402371-23402416)
chr7 (70-115)||(25691683-25691728)
chr7 (70-102)||(7334772-7334804)
chr7 (70-110)||(48928706-48928746)
[»] chr8 (13 HSPs)
chr8 (70-115)||(1204929-1204974)
chr8 (70-115)||(10555345-10555390)
chr8 (70-115)||(16222865-16222910)
chr8 (70-189)||(35735910-35736029)
chr8 (70-104)||(7998365-7998399)
chr8 (70-104)||(39099263-39099297)
chr8 (70-115)||(5018013-5018058)
chr8 (70-115)||(5300089-5300134)
chr8 (70-115)||(7891091-7891136)
chr8 (70-115)||(13307625-13307670)
chr8 (74-115)||(23854574-23854615)
chr8 (70-110)||(6446711-6446751)
chr8 (70-102)||(35459854-35459886)
[»] chr6 (9 HSPs)
chr6 (70-115)||(8513236-8513281)
chr6 (70-115)||(30353494-30353539)
chr6 (70-110)||(20768089-20768129)
chr6 (70-115)||(3880075-3880120)
chr6 (70-115)||(4318959-4319004)
chr6 (70-115)||(6088911-6088956)
chr6 (70-115)||(19631752-19631797)
chr6 (70-115)||(24662190-24662235)
chr6 (70-102)||(1945836-1945868)
[»] scaffold0318 (1 HSPs)
scaffold0318 (70-115)||(11909-11955)


Alignment Details
Target: chr5 (Bit Score: 126; Significance: 7e-65; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 267 - 408
Target Start/End: Original strand, 13380706 - 13380847
Alignment:
Q  267 gtaatcgtaaatcaaaattgggtaaaacaccaactttgaatccctttcatcttcatccgtctgaatctcttcatcttcatcaattgccaccttttattta 366  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||    
T  13380706 gtaatcgtaaatcaaaatttggtaaaacaccaactttgaatccctttcatcttcatccgtctgaatctcttcatcttcatgaattgccgccttttattta 13380805  T
Q  367 tttttccaaacaagagaaaactgcccacaatataacaccaaa 408  Q
    ||||||||||||||||||||||||||||||||||||| ||||    
T  13380806 tttttccaaacaagagaaaactgcccacaatataacaacaaa 13380847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 18 - 204
Target Start/End: Original strand, 13380447 - 13380632
Alignment:
Q  18 acgaagtaattagtgaacaaataaaagtatatgcatttaannnnnnnnaggcaaattctacggtgaagtcatgagaatgacttttctagtgaaattaatc 117  Q
    ||||||||||||||||||||||||||||||||||||||||        ||||||||| || |||||||||||||||||||||||||||||||| |||| |    
T  13380447 acgaagtaattagtgaacaaataaaagtatatgcatttaattttttt-aggcaaattttatggtgaagtcatgagaatgacttttctagtgaagttaacc 13380545  T
Q  118 atatgatcacttaataagtatttgtgtatttaatctttataacgtcatactacatggtgtattgcacatttgtcgataaaatatgtc 204  Q
     |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  13380546 ctatgatcacttaatgagtatttgtgtatttaatctttataacgtcatactacatggtgtattgcacatttacccataaaatatgtc 13380632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 39572822 - 39572868
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaat 116  Q
    |||||||| ||||||||||||||||||||||||||||| || |||||    
T  39572822 aaattctatggtgaagtcatgagaatgacttttctagttaagttaat 39572868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 8742059 - 8742014
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    
T  8742059 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 8742014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 5837558 - 5837598
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  5837558 aaattctacggtgaattcatgagaatgacttttctggtgaa 5837598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 13956517 - 13956483
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||||||||||||||||| ||||||||||||    
T  13956517 aaattctacggtgaagtcatgaaaatgacttttct 13956483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 25501098 - 25501064
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||| ||||||||||||||||||||||||||    
T  25501098 aaattctatggtgaagtcatgagaatgacttttct 25501064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 10237417 - 10237462
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||  |||||||||||| |||||||||||||||||| ||||    
T  10237417 aaattctattgtgaagtcatgaaaatgacttttctagtgaagttaa 10237462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 19119862 - 19119907
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  19119862 aaattctatggtgaagtcatgagaatgacttttgtggtgaagttaa 19119907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 22616497 - 22616542
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  22616497 aaattctatggtgaagtcatgaaaatgacttttctggtgaagttaa 22616542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 26268077 - 26268122
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||| |||||||||||||||||| |||||| ||||| ||||    
T  26268077 aaattctacagtgaagtcatgagaatgatttttctggtgaagttaa 26268122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 27318659 - 27318614
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||| ||||||||||||||||||||| |||||| ||||| ||||    
T  27318659 aaattcaacggtgaagtcatgagaatgatttttctggtgaagttaa 27318614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 12164961 - 12164929
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    ||||| |||||||||||||||||||||||||||    
T  12164961 aaattttacggtgaagtcatgagaatgactttt 12164929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 14409498 - 14409458
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| ||||||||||||||||||| |||||| |||||    
T  14409498 aaattctatggtgaagtcatgagaatgatttttctggtgaa 14409458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 351
Target Start/End: Complemental strand, 33752780 - 33752736
Alignment:
Q  307 tccctttcatcttcatccgtctgaatctcttcatcttcatcaatt 351  Q
    ||||||||||||||||| || ||||| | ||||||||||||||||    
T  33752780 tccctttcatcttcatcagtttgaatatgttcatcttcatcaatt 33752736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 267 - 351
Target Start/End: Complemental strand, 28293083 - 28292999
Alignment:
Q  267 gtaatcgtaaatcaaaattgggtaaaacaccaactttgaatccctttcatcttcatccgtctgaatctcttcatcttcatcaatt 351  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  || ||||| | ||||||||||||||||    
T  28293083 gtaatcataaatcaaaattgggtaaaacatcaactttgaatccctttcatcttcatttgtttgaatatgttcatcttcatcaatt 28292999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 55241312 - 55241266
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaat 116  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||    
T  55241312 aaattctatggtgaagtcatgagaatgacttttctagtgaagttaat 55241266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 151
Target Start/End: Complemental strand, 20097536 - 20097455
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaat 151  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||| | |||||||| | | |  | |||||||||||||||    
T  20097536 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaaccctatgatcaatcattccgcatttgtgtatttaat 20097455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 38812305 - 38812252
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatga 123  Q
    |||||||| |||||||||||||||||||||||||| ||||| |||||| |||||    
T  38812305 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaatcctatga 38812252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 189
Target Start/End: Original strand, 51204582 - 51204701
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaatctttataacgtcatacta 169  Q
    |||||||| ||||||||||| | |||||||||||| ||||| |||| | |||||||| ||| | ||  |||||||||||||||  | | || ||| | ||    
T  51204582 aaattctatggtgaagtcataaaaatgacttttctggtgaagttaaccctatgatcaattattgagcttttgtgtatttaatccatgtcacatcagatta 51204681  T
Q  170 catggtgtattgcacatttg 189  Q
     |||||| ||||||||||||    
T  51204682 tatggtgcattgcacatttg 51204701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 197
Target Start/End: Original strand, 9743591 - 9743714
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaatctttataacgtcatacta 169  Q
    |||||||| ||| ||||||||  |||||||||| | ||||||||||    |||| || ||| | |  ||||||||||||||||  | |||||||||| ||    
T  9743591 aaattctatggtaaagtcatgtaaatgacttttttggtgaaattaa----atgaccaattattgaacatttgtgtatttaatccatgtaacgtcatatta 9743686  T
Q  170 catggtgtattgcacatttgtcgataaa 197  Q
     |||||||||||||||||| || |||||    
T  9743687 tatggtgtattgcacatttttccataaa 9743714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 27396619 - 27396664
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    
T  27396619 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 27396664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 28003194 - 28003154
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  28003194 aaattctatggtgaagtcatgagaatgacttttctggtgaa 28003154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 49375969 - 49376001
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||||||||||||||||||||||||||||    
T  49375969 aaattctacggtgaagtcatgagaatgactttt 49376001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 117
Target Start/End: Original strand, 38811816 - 38811863
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatc 117  Q
    |||||||| ||||||||||||||||||| |||||| ||||| ||||||    
T  38811816 aaattctatggtgaagtcatgagaatgatttttctggtgaagttaatc 38811863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 2266901 - 2266856
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||| || ||||||||||||| |||||||||||||||||| ||||    
T  2266901 aaattatatggtgaagtcatgataatgacttttctagtgaagttaa 2266856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 33341398 - 33341443
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||  |||||||||||||||||| |||||| ||||||||||    
T  33341398 aaattctatagtgaagtcatgagaatgatttttctggtgaaattaa 33341443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 35021243 - 35021198
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  35021243 aaattctatggtgaagtcatgaaaatgacttttctggtgaagttaa 35021198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 47253752 - 47253797
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  47253752 aaattctatggtgaagtcatgagaatgacttttttggtgaagttaa 47253797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 28293282 - 28293250
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||||| ||||||||||||||||||||||    
T  28293282 aaattctacgctgaagtcatgagaatgactttt 28293250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 38011857 - 38011897
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| |||||| ||||||||||||||||||| |||||    
T  38011857 aaattctatggtgaaatcatgagaatgacttttctggtgaa 38011897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 267 - 346
Target Start/End: Complemental strand, 12007 - 11928
Alignment:
Q  267 gtaatcgtaaatcaaaattgggtaaaacaccaactttgaatccctttcatcttcatccgtctgaatctcttcatcttcat 346  Q
    ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| | |||| ||||||    
T  12007 gtaatcgtaaatcaaaattggataaaacacaaactttgaatccctttcatcttcatctgtatgaatatgttcaacttcat 11928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 40640679 - 40640564
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaatctttataacgtcatacta 169  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    ||| ||| | | | || ||||||||||||||||  | | |||||||| ||    
T  40640679 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaa----atggtcaatcattgagcatttgtgtatttaatccatgtcacgtcatatta 40640584  T
Q  170 catggtgtattgcacatttg 189  Q
     |||||||||||||||||||    
T  40640583 tatggtgtattgcacatttg 40640564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 53812021 - 53811987
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||||||||||||||||||||||||||||||    
T  53812021 aaattctacggtgaagtcatgagaatgacttttct 53811987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 32180792 - 32180747
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  32180792 aaattgtacggtgaagttatgagaatgacttttctagtgaagttaa 32180747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 105
Target Start/End: Complemental strand, 18272268 - 18272233
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttcta 105  Q
    ||||| ||||||||||||||||||||||||||||||    
T  18272268 aaattatacggtgaagtcatgagaatgacttttcta 18272233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 153
Target Start/End: Original strand, 42204345 - 42204428
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaatct 153  Q
    ||||||||  |||||||| ||||||||||||||||  |||| |||| ||||||| |  ||| | || |||||||||||||||||    
T  42204345 aaattctatcgtgaagtcgtgagaatgacttttctgatgaagttaaccatatgacctattattgagcatttgtgtatttaatct 42204428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 4015454 - 4015488
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||| ||||||||||||||||||||||||||    
T  4015454 aaattctatggtgaagtcatgagaatgacttttct 4015488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 116
Target Start/End: Complemental strand, 52041105 - 52041059
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaat 116  Q
    |||||||  |||||||||||||||||||||||||| ||||| |||||    
T  52041105 aaattctgaggtgaagtcatgagaatgacttttctggtgaagttaat 52041059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 7327665 - 7327620
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||| ||||||||||||||| ||||||| ||||    
T  7327665 aaattctatggtgaagttatgagaatgacttttttagtgaagttaa 7327620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 21193600 - 21193645
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||| |||||||||||||||||||||| ||||| ||||    
T  21193600 aaattctatggtaaagtcatgagaatgacttttctggtgaagttaa 21193645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 35844320 - 35844365
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  35844320 aaattctatggtgaagtcatgataatgacttttctggtgaagttaa 35844365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 46297944 - 46297899
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||| |||||||||||| ||||| ||||    
T  46297944 aaattctatggtgaagtcatgaaaatgacttttctggtgaagttaa 46297899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 51213163 - 51213118
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  51213163 aaattctatggtgaagtcatgagaatgacttttttggtgaagttaa 51213118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 123
Target Start/End: Complemental strand, 53818554 - 53818501
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatga 123  Q
    ||||| || ||||||||||||||||||| |||||| ||||| |||||| |||||    
T  53818554 aaattttatggtgaagtcatgagaatgatttttctggtgaagttaatcttatga 53818501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 4556543 - 4556583
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  4556543 aaattctatggtgaagtcatgaaaatgacttttctcgtgaa 4556583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 22446247 - 22446215
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||||||||||||||||| ||||||||||    
T  22446247 aaattctacggtgaagtcatgaaaatgactttt 22446215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 22450962 - 22451002
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| ||||||||||||||||||| |||||| |||||    
T  22450962 aaattctatggtgaagtcatgagaatgatttttctggtgaa 22451002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 40552441 - 40552409
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||| ||||||||||||||||||||||||    
T  40552441 aaattctatggtgaagtcatgagaatgactttt 40552409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 31621730 - 31621690
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  31621730 aaattctacggtgaagtcatgagaatgacttttctagtgaa 31621690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 43579245 - 43579290
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  43579245 aaattctatggtgaagtcatgagaatgacttttctagtgaagttaa 43579290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 1547286 - 1547331
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    
T  1547286 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 1547331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 16415644 - 16415689
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    
T  16415644 aaattctaaggtgaagtcatgagaatgacttttctggtgaagttaa 16415689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 39393382 - 39393427
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||||||||||| |||||||||||||||||| |||| ||||    
T  39393382 aaattctacggtgaagttatgagaatgacttttctaatgaagttaa 39393427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 14758040 - 14758080
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  14758040 aaattttacggtgaagtcatgagaatgacttttctggtgaa 14758080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 38823213 - 38823247
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||| ||||||||||||||||||||||||||    
T  38823213 aaattctatggtgaagtcatgagaatgacttttct 38823247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 15752028 - 15752073
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  15752028 aaattctatggtgaagtcatgagaatgacttttttggtgaagttaa 15752073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 42663830 - 42663785
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||| |||||||||| ||||||| ||||    
T  42663830 aaattctatggtgaagtcatgataatgacttttttagtgaagttaa 42663785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 4150532 - 4150492
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  4150532 aaattctatggtgaagtcatgataatgacttttctggtgaa 4150492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 15964161 - 15964225
Alignment:
Q  132 taagtatttgtgtatttaatctttataacgtcatactacatggtgtattgcacatttgtcgataa 196  Q
    |||| ||||||||||||||||| | | |||||| | || || |||||||||||||||||| ||||    
T  15964161 taagcatttgtgtatttaatctatgtcacgtcaaattatatagtgtattgcacatttgtccataa 15964225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 33725777 - 33725737
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| ||| |||||| |||||||||||||||||||||    
T  33725777 aaattctatggtaaagtcaagagaatgacttttctagtgaa 33725737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 45414426 - 45414311
Alignment:
Q  89 tgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaatctttataacgtcatactacatggtgtattgcacattt 188  Q
    ||||||||| ||||||||| |||||||||||||| ||| ||| | || |||||| |||||||||| | | |||||| | || |||||| |||||| ||||    
T  45414426 tgagaatgatttttctagtaaaattaatcatatggtcaattattgagcatttgtatatttaatctatgtcacgtcagaatatatggtgcattgcatattt 45414327  T
Q  189 gtcgataaaatatgtc 204  Q
    |   ||||||||||||    
T  45414326 gcacataaaatatgtc 45414311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 70 - 116
Target Start/End: Original strand, 36641989 - 36642035
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaat 116  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||    
T  36641989 aaattctatggtgaagtcatgagaatgacttttctggtgaaattaat 36642035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 33551186 - 33551141
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||||||||||||||||||||||||||| ||||||| ||||    
T  33551186 aaattctacggtgaagtcatgagaatgacttttttagtgaagttaa 33551141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 345 - 408
Target Start/End: Complemental strand, 44596134 - 44596071
Alignment:
Q  345 atcaattgccaccttttatttatttttccaaacaagagaaaactgcccacaatataacaccaaa 408  Q
    |||||||||  ||| |||||||||||| |||||||||||| |||||||||||||| ||| ||||    
T  44596134 atcaattgctgcctcttatttattttttcaaacaagagaacactgcccacaatattacaacaaa 44596071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 6177778 - 6177823
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||||| ||||||||||||||||||||||| ||||| ||||    
T  6177778 aaattctacggcgaagtcatgagaatgacttttctggtgaagttaa 6177823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 41465512 - 41465557
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    
T  41465512 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 41465557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 13711467 - 13711512
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||| |||||||||||||| ||||| ||||    
T  13711467 aaattctatggtgaagtcatcagaatgacttttctggtgaagttaa 13711512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 19313855 - 19313900
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||| |||||||||||||| ||||| ||||    
T  19313855 aaattctatggtgaagtcattagaatgacttttctggtgaagttaa 19313900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 39788622 - 39788582
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    ||||| || ||||||||||| ||||||||||||||||||||    
T  39788622 aaattttatggtgaagtcataagaatgacttttctagtgaa 39788582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 43446507 - 43446475
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||| ||||||||||||||||||||||||    
T  43446507 aaattctatggtgaagtcatgagaatgactttt 43446475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 5657664 - 5657619
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    
T  5657664 aaattctatggtgaagtcatgagaatgacttttctagtgaagttaa 5657619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 189
Target Start/End: Complemental strand, 37854326 - 37854224
Alignment:
Q  83 aagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaatctttataacgtcatactacatggtgtattgc 182  Q
    |||||||||||||||||||||| ||||||||||    ||| ||| ||| | || ||||||||||||||||  | | |||||| | || ||||||||||||    
T  37854326 aagtcatgagaatgacttttctggtgaaattaa----atggtcaattattgagcatttgtgtatttaatccatgtcacgtcacattatatggtgtattgc 37854231  T
Q  183 acatttg 189  Q
    |||||||    
T  37854230 acatttg 37854224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 123
Target Start/End: Original strand, 3953734 - 3953787
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatga 123  Q
    |||||||| | |||||||||||||||||||||||| ||||| |||||| |||||    
T  3953734 aaattctatgatgaagtcatgagaatgacttttctggtgaagttaatcctatga 3953787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 151
Target Start/End: Original strand, 19786283 - 19786364
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaat 151  Q
    |||||||||| ||||||||||||||||||||||||  | || |||||||||||   ||| | | || |||||||||||||||    
T  19786283 aaattctacgatgaagtcatgagaatgacttttcttattaagttaatcatatgtctactaattgagcatttgtgtatttaat 19786364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 40381943 - 40381988
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||||||||||| ||||||||||||||||| ||||| ||||    
T  40381943 aaattctacggtgaagttatgagaatgacttttctggtgaagttaa 40381988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 117
Target Start/End: Complemental strand, 10359397 - 10359350
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatc 117  Q
    |||||||| ||||||||||||| |||||||||||| || |||||||||    
T  10359397 aaattctatggtgaagtcatgataatgacttttctggtaaaattaatc 10359350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 109
Target Start/End: Complemental strand, 26524510 - 26524471
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtga 109  Q
    |||||||| |||||||||||||||||||||||||| ||||    
T  26524510 aaattctatggtgaagtcatgagaatgacttttctggtga 26524471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 8861263 - 8861297
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||| ||||||||||||||||||||||||||    
T  8861263 aaattctatggtgaagtcatgagaatgacttttct 8861297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 6546497 - 6546542
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||| ||||||| |||||||||||| ||||    
T  6546497 aaattctatggtgaagtcataagaatgatttttctagtgaagttaa 6546542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 10675377 - 10675332
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||| ||||||||||||  |||||||||    
T  10675377 aaattctatggtgaagtcatgataatgacttttctgatgaaattaa 10675332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 18797307 - 18797352
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  18797307 aaattctatggtgaagtcatgagaatgacttttttggtgaagttaa 18797352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 23402416 - 23402371
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| || ||||||||||||||||||||||| ||||| ||||    
T  23402416 aaattctatggcgaagtcatgagaatgacttttctggtgaagttaa 23402371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 25691728 - 25691683
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||| || |||||||||||||||||||||||||| ||||| ||||    
T  25691728 aaattttatggtgaagtcatgagaatgacttttctcgtgaagttaa 25691683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 7334772 - 7334804
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||||||||||||| ||||||||||||||    
T  7334772 aaattctacggtgaagtcgtgagaatgactttt 7334804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 48928746 - 48928706
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    ||||| || |||||||||||||||||||||||||| |||||    
T  48928746 aaattttatggtgaagtcatgagaatgacttttctggtgaa 48928706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 1204929 - 1204974
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  1204929 aaattttacggtgaagtcatgagaatgacttttctggtgaagttaa 1204974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 10555390 - 10555345
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||    
T  10555390 aaattctacggtgaagtcatgagaatgacttttttggtgaagttaa 10555345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 16222865 - 16222910
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||||||||| ||||||||||||||||||| ||||| ||||    
T  16222865 aaattctacggtgaaatcatgagaatgacttttctggtgaatttaa 16222910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 189
Target Start/End: Complemental strand, 35736029 - 35735910
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaatcatatgatcacttaataagtatttgtgtatttaatctttataacgtcatacta 169  Q
    |||||||| ||||||||||| |||||||||||| | ||||| ||||||||| ||  | | | | || ||||||||||||||| | | |  ||| | | ||    
T  35736029 aaattctatggtgaagtcattagaatgacttttttggtgaagttaatcatacgacgaatcattgagcatttgtgtatttaatgtgtgtcccgttaaatta 35735930  T
Q  170 catggtgtattgcacatttg 189  Q
     |||||||||||||||||||    
T  35735929 tatggtgtattgcacatttg 35735910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Original strand, 7998365 - 7998399
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||| ||||||||||||||||||||||||||    
T  7998365 aaattctatggtgaagtcatgagaatgacttttct 7998399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 104
Target Start/End: Complemental strand, 39099297 - 39099263
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttct 104  Q
    |||||||| ||||||||||||||||||||||||||    
T  39099297 aaattctatggtgaagtcatgagaatgacttttct 39099263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 5018013 - 5018058
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||| |||||||||| ||||||| ||||    
T  5018013 aaattctatggtgaagtcatgataatgacttttttagtgaagttaa 5018058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 5300134 - 5300089
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| || |||| ||||    
T  5300134 aaattctatggtgaagtcatgagaatgacttttttaatgaagttaa 5300089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 7891136 - 7891091
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  7891136 aaattctatggtgaagtcatgagaatgactttttttgtgaagttaa 7891091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 13307625 - 13307670
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||||||||| |||||| ||||| ||||    
T  13307625 aaattctatggtgaagtcatgagaatgatttttctggtgaagttaa 13307670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 23854615 - 23854574
Alignment:
Q  74 tctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    ||||||||||||||||||||||||||||| | ||||| ||||    
T  23854615 tctacggtgaagtcatgagaatgacttttttggtgaagttaa 23854574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 6446751 - 6446711
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| ||||||||||||| |||||||||||| |||||    
T  6446751 aaattctatggtgaagtcatgataatgacttttctggtgaa 6446711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 35459886 - 35459854
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||| ||||||||||||||||||||||||    
T  35459886 aaattctatggtgaagtcatgagaatgactttt 35459854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 8513236 - 8513281
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    
T  8513236 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 8513281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 30353539 - 30353494
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||||| ||||| ||||    
T  30353539 aaattctatggtgaagtcatgagaatgacttttctggtgaagttaa 30353494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 70 - 110
Target Start/End: Original strand, 20768089 - 20768129
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaa 110  Q
    |||||||| |||||||||||||||||||||||||| |||||    
T  20768089 aaattctatggtgaagtcatgagaatgacttttctggtgaa 20768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 3880120 - 3880075
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||| ||||||||||||||| ||||| ||||    
T  3880120 aaattctatggtgaagtcacgagaatgacttttctggtgaagttaa 3880075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 4319004 - 4318959
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||||||||||||| | ||||| ||||    
T  4319004 aaattctatggtgaagtcatgagaatgacttttttggtgaagttaa 4318959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 6088911 - 6088956
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||||||||||| |||||| ||||| ||||    
T  6088911 aaattctatggtgaagtcatgagaatgatttttctggtgaagttaa 6088956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 19631752 - 19631797
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||||||||||| |||||||||||||| ||||| ||||    
T  19631752 aaattctatggtgaagtcataagaatgacttttctggtgaagttaa 19631797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 115
Target Start/End: Complemental strand, 24662235 - 24662190
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgacttttctagtgaaattaa 115  Q
    |||||||| ||| ||||||||| |||||||||||||||||| ||||    
T  24662235 aaattctatggtaaagtcatgataatgacttttctagtgaagttaa 24662190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Original strand, 1945836 - 1945868
Alignment:
Q  70 aaattctacggtgaagtcatgagaatgactttt 102  Q
    |||||||||||||||||||| ||||||||||||    
T  1945836 aaattctacggtgaagtcataagaatgactttt 1945868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 70 - 115
Target Start/End: Original strand, 11909 - 11955
Alignment:
Q  70 aaattctacggtgaagtcatgag-aatgacttttctagtgaaattaa 115  Q
    |||||||| |||||||||||||| |||||||||||| ||||||||||    
T  11909 aaattctatggtgaagtcatgagaaatgacttttctggtgaaattaa 11955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University