View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_low_7 (Length: 404)
Name: NF7841_low_7
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 328; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 13 - 386
Target Start/End: Original strand, 29934719 - 29935096
Alignment:
| Q |
13 |
cagggcccgctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaaattaatcaataatttaattttgatacat |
112 |
Q |
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| T |
29934719 |
cagggaccgctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaaattaatcaataatttaattttgatacat |
29934818 |
T |
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| Q |
113 |
tgtgtcgctgtaaaaaagtttcgtagaggctgaacttggaataaccaagtctcttcttctcatgtgaaccattccgatttactacaacacattacattgt |
212 |
Q |
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| T |
29934819 |
tgtgtcgctgtaaaaaagtttcgtagaggctgaacttggaataaccaagtctcttcttctcatgtaaaccaatccgatttactacaacacattacattgt |
29934918 |
T |
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| Q |
213 |
tttttggtcttgacaatccgattttttcacggaaaaagtcctgacctg---ctaatccaaagtcggacaacggattttttggtcttcatcaagcacccta |
309 |
Q |
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| T |
29934919 |
tttttggtcttgacaatccgattttttcacggaaaaagtccttacctggtagtaatccaaagtcggacaacggattttttggtcttcatgaagcacccta |
29935018 |
T |
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| Q |
310 |
agtaatttttatgtttcatttatattctatatatatag-tgatggatagaattatattttatgtagcagtagatattc |
386 |
Q |
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| T |
29935019 |
agtaatttttatgtttcatttatattttatatatatagttgatggatagaattatattttatgtagcagtagatattc |
29935096 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 93
Target Start/End: Original strand, 29932003 - 29932075
Alignment:
| Q |
21 |
gctgctattgtttctagcatcattgcatggcaaccatatcgttcctgcaataattataattcaaattaatcaa |
93 |
Q |
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| T |
29932003 |
gctgcaattgtttccagcatcattgcatggcatccgtaccgttcctgcagcagttatatttcagattaatcaa |
29932075 |
T |
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