View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_low_8 (Length: 396)
Name: NF7841_low_8
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 42529538 - 42529921
Alignment:
| Q |
1 |
cctccagcccattgttatagaattagcacgcctccataccttccaatttgaaccaattatatgttctagcagtatttcaactagcttctagttattgaca |
100 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529538 |
cctctagcccattgttatagaattagcacgcctccataccttccaatttgaaccaattatatgttctagcagtatttcaactagcttctagttattgaca |
42529637 |
T |
|
| Q |
101 |
gttaatttatcatctacatgttcatacattctccatctgctgccataactattactggttgattaacatcacttccccacacccctaaatgatatgaatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
42529638 |
gttaatttatcatctacatgttcatacattctccatctgctgccataactattactggttgatcaacatcacttccccacacccctaaatgatatgaatt |
42529737 |
T |
|
| Q |
201 |
aactgattagacatttcttttgattatatattctgctactcgcagctattattccagctaatttataggggtttcattattgagctatatatgagtagta |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529738 |
aactgattagacatttctttcgattatatattctgctacttgcagctattattccagctaatttataggggtttcattattgagctatatatgagtagta |
42529837 |
T |
|
| Q |
301 |
ttatggtcatgggtgtggttgacatgttgatacctttgtgataatttgattaaagttttgggtttcatctcactgccttgatgt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42529838 |
ttatggtcatgggtgtggttgacatgttgatacctttgtgataatttgattaaagttttgggtttcatctcactgccttgatgt |
42529921 |
T |
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