View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7841_low_9 (Length: 369)
Name: NF7841_low_9
Description: NF7841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7841_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 38046388 - 38046020
Alignment:
| Q |
1 |
gttgctaagttatagccagtaatacaaccattcttgtatacttttgcagactattaaagatctcccagatgcccaggaagttgccgacaaaagtattgaa |
100 |
Q |
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| T |
38046388 |
gttgctaagttatagccagtaatacaaccattcttgtatacttttgcagactattaaagatctcccagatgcccaggaagttgccgacaaaagtattgaa |
38046289 |
T |
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| Q |
101 |
gttgatggtgcaccacaacaatgaccgtatctcatgtctgtgtagtgtgtaccataattcatttaatgtaaattacaattagttattatttattatgtac |
200 |
Q |
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| T |
38046288 |
gttgatggtgcaccacaacaatgaccgtatctcatgtctgtgtagtgtgtaccataattcatttaatgtaaattacatttagttattatttattatgtac |
38046189 |
T |
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| Q |
201 |
taaattaaatgtctgttgtaattttatgagagtgtcccaagaaatcaagtctactggatgattcagtcccttttatggccggtatttttaatttaattga |
300 |
Q |
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| T |
38046188 |
taaattaaacgtctgttgtaattttatgagagtgtcccaagaaatcaagtctactggatgattcagtcccttttatggccggtatttttaatttaattga |
38046089 |
T |
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| Q |
301 |
tggtggatatttcattcactaagaaaaaggagatcaaacaaaattacaattttgtcttaagaaatatta |
369 |
Q |
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| T |
38046088 |
tagtggatatttcattcactaagaaaaaggagatcaaacaaaattacaattttgtcttaagaaatatta |
38046020 |
T |
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