View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7842_high_1 (Length: 623)

Name: NF7842_high_1
Description: NF7842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7842_high_1
NF7842_high_1
[»] chr7 (8 HSPs)
chr7 (255-614)||(8405530-8405898)
chr7 (24-155)||(8405292-8405423)
chr7 (45-154)||(48089239-48089347)
chr7 (63-146)||(24657983-24658068)
chr7 (81-143)||(10702749-10702811)
chr7 (81-148)||(10703132-10703199)
chr7 (355-418)||(20046539-20046602)
chr7 (355-430)||(28014305-28014380)
[»] chr8 (1 HSPs)
chr8 (39-149)||(18075803-18075913)
[»] chr2 (4 HSPs)
chr2 (39-148)||(2081648-2081757)
chr2 (40-154)||(40372728-40372842)
chr2 (71-148)||(6141465-6141542)
chr2 (81-154)||(18458779-18458852)
[»] chr4 (3 HSPs)
chr4 (62-146)||(2201210-2201294)
chr4 (70-148)||(2185212-2185290)
chr4 (91-142)||(54054455-54054506)
[»] chr1 (3 HSPs)
chr1 (70-146)||(42311479-42311555)
chr1 (39-98)||(36420536-36420595)
chr1 (371-418)||(5924830-5924877)
[»] chr3 (3 HSPs)
chr3 (70-148)||(8034760-8034838)
chr3 (70-154)||(7728915-7728999)
chr3 (355-430)||(17402814-17402889)
[»] chr6 (2 HSPs)
chr6 (355-430)||(5377002-5377077)
chr6 (355-430)||(5378857-5378932)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 255 - 614
Target Start/End: Original strand, 8405530 - 8405898
Alignment:
Q  255 gaagttatccgccattaacacctgtaagaatataaagcttcaattctcaatctaaaag-tattaatggggataagttcttgatctaatggttggttagtt 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||    
T  8405530 gaagttatccgccattaacacctgtaagaatataaagcttcaattctcaatctaaaaggtattaatggggataagttctcaatctaatggttggttagtt 8405629  T
Q  354 gtcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta-------gacccttcacattttg 446  Q
     ||||||||||||||| || ||||||||||||||||||||||||  || |||||||||||||||| |||||||||||       || | ||| || ||||    
T  8405630 atcaatctagtcatttctacaatgagtttctacgattatctcccccatgaatactcttatgcttgctattttgcttacatatatgatctttcgcactttg 8405729  T
Q  447 gttccatgattcataacacttcaatgtagcatactttttgacatgtttaacagttcagatatgcaaaatgaa-tgttgtacagccaaatcagatcgtcac 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| ||||||||||||| |||||    
T  8405730 gttccatgattcataacacttcaatgtagcatactttttgacatgtttaacagttcagatatgcagaatgaattgctgtatagccaaatcagattgtcac 8405829  T
Q  546 taatgaatcgtatcaaccaaacaagtgttgcacaacaaattatttttcgaaagcaacatcatattcttc 614  Q
    |||||||| || |||||||||||||||||||||||||||||||||||  ||| ||||||||||||||||    
T  8405830 taatgaattgtgtcaaccaaacaagtgttgcacaacaaattattttttcaaaacaacatcatattcttc 8405898  T

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Target: chr7; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 24 - 155
Target Start/End: Original strand, 8405292 - 8405423
Alignment:
Q  24 gagtcctacgcgcctcttgcccttttgcttttggcaactttgtaagagcacactactgtattttagactatttgatccacgagtttttgtgtttcttacc 123  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||| |||||||| ||||||||||||||| |||||    
T  8405292 gagtcctacgcgcctcttgcccttttgcttttggcatctttgtaagagcacactactgtgttttagactttttgatccgcgagtttttgtgtttattacc 8405391  T
Q  124 caatctcgacaagaataatatttgttaattac 155  Q
    |||||||||||||||||||||||| |||||||    
T  8405392 caatctcgacaagaataatatttgctaattac 8405423  T

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Target: chr7; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 48089347 - 48089239
Alignment:
Q  45 cttttgcttttggcaactttgtaagagcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatat 144  Q
    ||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |||||||||||||    
T  48089347 cttttgcttttagcacctttgtaagagcacactactgtattttagactatttgatcc-cgagtttttgtgtttcttacacaatctcaacaagaataatat 48089249  T
Q  145 ttgttaatta 154  Q
    ||||| ||||    
T  48089248 ttgttgatta 48089239  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 63 - 146
Target Start/End: Complemental strand, 24658068 - 24657983
Alignment:
Q  63 ttgtaagagcacactactgt--attttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatattt 146  Q
    ||||||||||||||||||||  |||||| |||||||||||| ||||||||| |||||||||| |||||| ||  ||||||| ||||    
T  24658068 ttgtaagagcacactactgtgtattttaaactatttgatccgcgagtttttatgtttcttacacaatcttgatgagaataaaattt 24657983  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 10702811 - 10702749
Alignment:
Q  81 gtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataata 143  Q
    |||| ||||||||||||||   | |||||||||||||||||| |||||||||| |||||||||    
T  10702811 gtatgttagactatttgatatgcaagtttttgtgtttcttacacaatctcgacgagaataata 10702749  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 148
Target Start/End: Original strand, 10703132 - 10703199
Alignment:
Q  81 gtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 148  Q
    |||| |||| |||||||||   |||||||||||||||||||  |||||||| | ||||||||||||||    
T  10703132 gtatgttaggctatttgatatgcgagtttttgtgtttcttatacaatctcgtcgagaataatatttgt 10703199  T

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Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 418
Target Start/End: Complemental strand, 20046602 - 20046539
Alignment:
Q  355 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttg 418  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | ||||||||||||||    
T  20046602 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttg 20046539  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 28014380 - 28014305
Alignment:
Q  355 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 430  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || |  ||||||||||||| ||| |||||||    
T  28014380 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagcactcttatgcttgctatcttgctta 28014305  T

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Target: chr8 (Bit Score: 79; Significance: 1e-36; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 39 - 149
Target Start/End: Complemental strand, 18075913 - 18075803
Alignment:
Q  39 cttgcccttttgcttttggcaactttgtaagagcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaa 138  Q
    ||||| ||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||| ||||    
T  18075913 cttgctcttttgcttttagcacctttgtatgagcacactactgtattttagactatttgatccgcgagtttttgtgtttcttacacaatcttgacgagaa 18075814  T
Q  139 taatatttgtt 149  Q
    |||||||||||    
T  18075813 taatatttgtt 18075803  T

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Target: chr2 (Bit Score: 78; Significance: 5e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 39 - 148
Target Start/End: Original strand, 2081648 - 2081757
Alignment:
Q  39 cttgcccttttgcttttggcaactttgtaagagcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaa 138  Q
    ||||| ||||||||||||||| || |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||  |||||||||| ||||    
T  2081648 cttgctcttttgcttttggcacctctgtaagagcacactaccgtattttagactatttgatccgcgagtttttgtgtttcttagacaatctcgacgagaa 2081747  T
Q  139 taatatttgt 148  Q
    ||||||||||    
T  2081748 taatatttgt 2081757  T

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Target: chr2; HSP #2
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 40 - 154
Target Start/End: Complemental strand, 40372842 - 40372728
Alignment:
Q  40 ttgcccttttgcttttggcaactttgtaagagcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaat 139  Q
    |||| ||||||||||| ||| |||||||||||||||||| | |||||||||||||||||||   |||||||||| |||||||| |||||||||| |||||    
T  40372842 ttgctcttttgctttttgcacctttgtaagagcacactagtatattttagactatttgatctgtgagtttttgtttttcttacacaatctcgacgagaat 40372743  T
Q  140 aatatttgttaatta 154  Q
     ||||||||| ||||    
T  40372742 gatatttgttgatta 40372728  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 71 - 148
Target Start/End: Complemental strand, 6141542 - 6141465
Alignment:
Q  71 gcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 148  Q
    |||||||| ||||| || |||||||||||   |||||||||||||||||||| |||||||||| ||||||||||||||    
T  6141542 gcacactagtgtatgttcgactatttgatttgcgagtttttgtgtttcttacacaatctcgacgagaataatatttgt 6141465  T

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Target: chr2; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 18458852 - 18458779
Alignment:
Q  81 gtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatatttgttaatta 154  Q
    |||| |||||||||||||||   ||||||||||||||||||| |||||||||| |||||||||||||| |||||    
T  18458852 gtatgttagactatttgatctgtgagtttttgtgtttcttacacaatctcgacgagaataatatttgtaaatta 18458779  T

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Target: chr4 (Bit Score: 61; Significance: 7e-26; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 2201210 - 2201294
Alignment:
Q  62 tttgtaagagcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatattt 146  Q
    ||||||||||||| |||||||||||||||||||||||||  | | |||||||||||||||| |||||||||||||||||||||||    
T  2201210 tttgtaagagcacgctactgtattttagactatttgatctgcaaatttttgtgtttcttacacaatctcgacaagaataatattt 2201294  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 2185290 - 2185212
Alignment:
Q  70 agcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 148  Q
    ||||||||||| ||| |||||||||||||||  |||||||||||||||||||| ||||||| |||||||||||||||||    
T  2185290 agcacactactatatgttagactatttgatctgcgagtttttgtgtttcttacacaatctcaacaagaataatatttgt 2185212  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 91 - 142
Target Start/End: Original strand, 54054455 - 54054506
Alignment:
Q  91 ctatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataat 142  Q
    ||||||||| | |||||||||||||||||||| |||||||||| ||| ||||    
T  54054455 ctatttgatgcgcgagtttttgtgtttcttacacaatctcgacgagattaat 54054506  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 70 - 146
Target Start/End: Original strand, 42311479 - 42311555
Alignment:
Q  70 agcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatattt 146  Q
    ||||||||||||||| |||||||||||||||  |||||||||||||||||||| |||||||||| ||||||||||||    
T  42311479 agcacactactgtatattagactatttgatctgcgagtttttgtgtttcttacacaatctcgacgagaataatattt 42311555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 36420595 - 36420536
Alignment:
Q  39 cttgcccttttgcttttggcaactttgtaagagcacactactgtattttagactatttga 98  Q
    ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  36420595 cttgctcttttgcttttggcacctttgtaagagcacactactgtattttagactatttga 36420536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 371 - 418
Target Start/End: Complemental strand, 5924877 - 5924830
Alignment:
Q  371 tataatgagtttctacgattatctcccatataaatactcttatgcttg 418  Q
    ||||||||||||||| || ||||||| |||| ||||||||||||||||    
T  5924877 tataatgagtttctatgagtatctcctatatgaatactcttatgcttg 5924830  T

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Target: chr3 (Bit Score: 51; Significance: 7e-20; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 70 - 148
Target Start/End: Complemental strand, 8034838 - 8034760
Alignment:
Q  70 agcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatatttgt 148  Q
    ||||||||| ||||| |||||||||||||||  ||| |||||||||||||||| |||||||||| ||||||||||||||    
T  8034838 agcacactattgtatgttagactatttgatctgcgaatttttgtgtttcttacacaatctcgacgagaataatatttgt 8034760  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 70 - 154
Target Start/End: Original strand, 7728915 - 7728999
Alignment:
Q  70 agcacactactgtattttagactatttgatccacgagtttttgtgtttcttacccaatctcgacaagaataatatttgttaatta 154  Q
    ||||||||| |||||||||||||||||||||  || ||||||||||||||||| ||||||| || | ||||||||||||| ||||    
T  7728915 agcacactagtgtattttagactatttgatctgcgggtttttgtgtttcttacacaatctcaacgataataatatttgttgatta 7728999  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 430
Target Start/End: Complemental strand, 17402889 - 17402814
Alignment:
Q  355 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 430  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | |||||||||||||| ||| |||||||    
T  17402889 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgctta 17402814  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 5377002 - 5377077
Alignment:
Q  355 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 430  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | |||||||||||||| ||| |||||||    
T  5377002 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgctta 5377077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 5378857 - 5378932
Alignment:
Q  355 tcaatctagtcatttttataatgagtttctacgattatctcccatataaatactcttatgcttgttattttgctta 430  Q
    |||||||| |||||| || |||||||||||| || ||||||||| || | |||||||||||||| ||| |||||||    
T  5378857 tcaatctattcatttctacaatgagtttctatgagtatctcccacatgagtactcttatgcttgctatcttgctta 5378932  T

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