View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7842_high_3 (Length: 354)

Name: NF7842_high_3
Description: NF7842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7842_high_3
NF7842_high_3
[»] chr6 (10 HSPs)
chr6 (16-202)||(5725853-5726039)
chr6 (16-146)||(4389500-4389630)
chr6 (16-146)||(4376815-4376945)
chr6 (26-202)||(4414868-4415044)
chr6 (219-336)||(18569033-18569150)
chr6 (16-202)||(4359866-4360052)
chr6 (16-137)||(4384388-4384509)
chr6 (69-202)||(4365312-4365445)
chr6 (69-137)||(4369706-4369774)
chr6 (299-339)||(2091048-2091088)
[»] chr7 (4 HSPs)
chr7 (218-339)||(28574729-28574850)
chr7 (219-339)||(32971756-32971876)
chr7 (219-336)||(5472140-5472258)
chr7 (242-339)||(38658047-38658144)
[»] chr2 (2 HSPs)
chr2 (218-339)||(16237594-16237715)
chr2 (219-339)||(32407754-32407874)
[»] chr3 (5 HSPs)
chr3 (218-339)||(48822952-48823073)
chr3 (219-339)||(20632922-20633042)
chr3 (219-339)||(11691880-11692000)
chr3 (265-339)||(10448894-10448968)
chr3 (218-246)||(10448877-10448905)
[»] chr1 (3 HSPs)
chr1 (218-339)||(29752210-29752331)
chr1 (218-339)||(38833022-38833140)
chr1 (219-322)||(18185670-18185773)
[»] chr4 (3 HSPs)
chr4 (218-339)||(24323376-24323497)
chr4 (219-339)||(36123688-36123808)
chr4 (247-339)||(40342709-40342801)
[»] chr5 (1 HSPs)
chr5 (218-339)||(39180925-39181046)
[»] chr8 (2 HSPs)
chr8 (225-338)||(5699691-5699804)
chr8 (272-339)||(14137935-14138002)


Alignment Details
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 5726039 - 5725853
Alignment:
Q  16 atgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaact 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5726039 atgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaact 5725940  T
Q  116 ccttgtccaaaaccaaatcctcgacgaattttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5725939 ccttgtccaaaaccaaatcctcgacgaattttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 5725853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 4389500 - 4389630
Alignment:
Q  16 atgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaact 115  Q
    ||||||||  |||||||||| ||||||||| ||||||||| |||||| | || ||||||||||||||||||  ||||||||||||||| |||||||||||    
T  4389500 atgaaaccggtggctggttcatcaattgaattgaccaaacaaagcacatcaatcagaggatttgcacctttcaaacaaatcataacatttttccaaaact 4389599  T
Q  116 ccttgtccaaaaccaaatcctcgacgaattt 146  Q
    ||||||||||||||| |||||| || |||||    
T  4389600 ccttgtccaaaaccacatcctcaacaaattt 4389630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 16 - 146
Target Start/End: Original strand, 4376815 - 4376945
Alignment:
Q  16 atgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaact 115  Q
    ||||||||  |||||||||| || |||| | |||||||||||||||| | || |||||||||||| || ||  ||||||||||||||| |||||||||||    
T  4376815 atgaaaccagtggctggttcatcgattgtattgaccaaacgaagcacatcaagcagaggatttgcgccgttcaaacaaatcataacatttttccaaaact 4376914  T
Q  116 ccttgtccaaaaccaaatcctcgacgaattt 146  Q
    ||||||||||||||| |||||| || |||||    
T  4376915 ccttgtccaaaaccacatcctcaacaaattt 4376945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 26 - 202
Target Start/End: Complemental strand, 4415044 - 4414868
Alignment:
Q  26 tggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaa 125  Q
    ||||||| || || |||||||||||||||| |||||||| |||||| |||| ||||| |||| |||||||||| || | || ||||||| |  |||||||    
T  4415044 tggctggctcatctattgaactgaccaaacaaagcacttcaaccaggggatgtgcacttttaaaacaaatcatgacgttttcccaaaaccctgtgtccaa 4414945  T
Q  126 aaccaaatcctcgacgaattttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 202  Q
    ||||| |||||||||| |||| |||||  | ||||  || |||| | |||||||||||  |||||||||||||||||    
T  4414944 aaccacatcctcgacgtatttcccattactcgtcttcgccaactggctggacttccactccttggatgtgaacattc 4414868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 219 - 336
Target Start/End: Complemental strand, 18569150 - 18569033
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 318  Q
    |||||||||||||  ||| ||||||||||||||||| ||| |||||||||| ||||||||||||   ||||||| | || ||||||||||| |||||| |    
T  18569150 atgaaagggagggatgaaacccggaaaaagaaattagatcataatcaagcgtggaaaagtaacctttgcttgataaacatctaacaaatggctaatttaa 18569051  T
Q  319 gtcggacacgactcataa 336  Q
    ||| ||||||||||||||    
T  18569050 gtcagacacgactcataa 18569033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 4359866 - 4360052
Alignment:
Q  16 atgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaact 115  Q
    ||||||||||| | |||||  || |||||| || ||||||||| ||||| ||  | ||||| |  ||||||||||||||||||||||| ||||||||||     
T  4359866 atgaaacccatagttggtttctcgattgaattggccaaacgaaacacttcaagtataggatatatacctttataacaaatcataacatttttccaaaacc 4359965  T
Q  116 ccttgtccaaaaccaaatcctcgacgaattttccattttttgtctctgcaaactcgttggacttccacctcttggatgtgaacattc 202  Q
    | |||| |||||||  |||||| | | |||| |||||  | |||| |||||||||| |||||||||||  ||||||| |||||||||    
T  4359966 ctttgttcaaaaccgcatcctcaatgtatttcccattcatcgtctttgcaaactcgctggacttccactccttggatttgaacattc 4360052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 16 - 137
Target Start/End: Original strand, 4384388 - 4384509
Alignment:
Q  16 atgaaacccatggctggttcgtcaattgaactgaccaaacgaagcacttgaaccagaggatttgcacctttataacaaatcataacatctttccaaaact 115  Q
    ||||||||  |||||||||| || |||||| |||||||||||||||| | || |||||||||||| || ||  ||||| || |||||| |||||| ||||    
T  4384388 atgaaaccggtggctggttcatcgattgaattgaccaaacgaagcacatcaagcagaggatttgcgccgttcaaacaattcgtaacatttttccagaact 4384487  T
Q  116 ccttgtccaaaaccaaatcctc 137  Q
    ||||||||||||||| ||||||    
T  4384488 ccttgtccaaaaccacatcctc 4384509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 4365312 - 4365445
Alignment:
Q  69 cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctcgacgaattttccattttttgtctctgcaaac 168  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||  |  |||| | |    ||| ||||||||||    
T  4365312 cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctctgcccatttcctagaccttggctctgcaaac 4365411  T
Q  169 tcgttggacttccacctcttggatgtgaacattc 202  Q
    ||| ||||||||||   || ||||||||||||||    
T  4365412 tcgctggacttccattcctcggatgtgaacattc 4365445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 69 - 137
Target Start/End: Original strand, 4369706 - 4369774
Alignment:
Q  69 cagaggatttgcacctttataacaaatcataacatctttccaaaactccttgtccaaaaccaaatcctc 137  Q
    |||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| || ||||||    
T  4369706 cagaggttttacacctttataacaaatcataacatatttccaaaactccttgtccaaaatcatatcctc 4369774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 299 - 339
Target Start/End: Original strand, 2091048 - 2091088
Alignment:
Q  299 ctaacaaatggttaatttgagtcggacacgactcataaaac 339  Q
    |||||||||| ||||||||||||||||| ||||||||||||    
T  2091048 ctaacaaatgattaatttgagtcggacaagactcataaaac 2091088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 122; Significance: 2e-62; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 218 - 339
Target Start/End: Original strand, 28574729 - 28574850
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28574729 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 28574828  T
Q  318 agtcggacacgactcataaaac 339  Q
    ||||||||||||||||||||||    
T  28574829 agtcggacacgactcataaaac 28574850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 32971876 - 32971756
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 318  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||    
T  32971876 atgaatgggaggaccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagttaacaaatagttaatttga 32971777  T
Q  319 gtcggacacgactcataaaac 339  Q
    |||||||||||||||||||||    
T  32971776 gtcggacacgactcataaaac 32971756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 219 - 336
Target Start/End: Complemental strand, 5472258 - 5472140
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagt-aacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||||||||||| || | ||||||||||| || |||||||||||||||||||    
T  5472258 atgaaagggagggccgaaatccgaaaaaagaaattacatcttaatcaagcgcggaaaagtaaatctccgcttgatcaacaactaacaaatggttaatttg 5472159  T
Q  318 agtcggacacgactcataa 336  Q
    ||| || ||||||||||||    
T  5472158 agttgggcacgactcataa 5472140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 242 - 339
Target Start/End: Original strand, 38658047 - 38658144
Alignment:
Q  242 gaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaac 339  Q
    |||| |||||||||||||||||||| |||||||||| || ||  | ||||||||||  |||||||||  ||||||||||||||||  |||| ||||||    
T  38658047 gaaagagaaattacatcttaatcaaacgcggaaaagaaatccatgtttgatcagcaattaacaaatgactaatttgagtcggacaaaactcgtaaaac 38658144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 218 - 339
Target Start/End: Complemental strand, 16237715 - 16237594
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16237715 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 16237616  T
Q  318 agtcggacacgactcataaaac 339  Q
    ||||||||||||||||||||||    
T  16237615 agtcggacacgactcataaaac 16237594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 219 - 339
Target Start/End: Complemental strand, 32407874 - 32407754
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 318  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32407874 atgaaagggagggcctaagcccggaaaaagaaattacatcttaatcaaacgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 32407775  T
Q  319 gtcggacacgactcataaaac 339  Q
    ||||||||| ||| |||||||    
T  32407774 gtcggacacaacttataaaac 32407754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 4e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 218 - 339
Target Start/End: Original strand, 48822952 - 48823073
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  48822952 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagtgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 48823051  T
Q  318 agtcggacacgactcataaaac 339  Q
    ||||||||||||||||||||||    
T  48823052 agtcggacacgactcataaaac 48823073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 20632922 - 20633042
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20632922 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 20633021  T
Q  319 gtcggacacgactcataaaac 339  Q
    ||||| |||||||||||||||    
T  20633022 gtcggtcacgactcataaaac 20633042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 11691880 - 11692000
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 318  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11691880 atgaaagggagagccgaagcccggaaaaagaaattacgtcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 11691979  T
Q  319 gtcggacacgactcataaaac 339  Q
    |||||||||||||||||||||    
T  11691980 gtcggacacgactcataaaac 11692000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 265 - 339
Target Start/End: Original strand, 10448894 - 10448968
Alignment:
Q  265 aagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaac 339  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  10448894 aagcccggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcagacacgactcataaaac 10448968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 218 - 246
Target Start/End: Original strand, 10448877 - 10448905
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaa 246  Q
    |||||||||||||||||||||||||||||    
T  10448877 gatgaaagggagggccgaagcccggaaaa 10448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 118; Significance: 4e-60; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 218 - 339
Target Start/End: Original strand, 29752210 - 29752331
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29752210 gatgaaagggagggccgaagcccggaaaaagaaattatatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 29752309  T
Q  318 agtcggacacgactcataaaac 339  Q
    ||||||||||||||||||||||    
T  29752310 agtcggacacgactcataaaac 29752331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 218 - 339
Target Start/End: Original strand, 38833022 - 38833140
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    ||||||||||||||||||||| |||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38833022 gatgaaagggagggccgaagctcggaa---gaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 38833118  T
Q  318 agtcggacacgactcataaaac 339  Q
    ||||||||||||||||||||||    
T  38833119 agtcggacacgactcataaaac 38833140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 219 - 322
Target Start/End: Complemental strand, 18185773 - 18185670
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||||  |||||| |||||||||||||||||||||||    
T  18185773 atgaaagggagggccgaagcccggaaaaagaaattacatcttaataaagcacggaaaaataacccccgtctgatcaacagctaacaaatggttaatttga 18185674  T
Q  319 gtcg 322  Q
    ||||    
T  18185673 gtcg 18185670  T

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Target: chr4 (Bit Score: 110; Significance: 2e-55; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 218 - 339
Target Start/End: Original strand, 24323376 - 24323497
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    |||||||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  24323376 gatgaaagggagggccgaagcccgaaaaaagaaattatatcttaatcaagcgccgaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 24323475  T
Q  318 agtcggacacgactcataaaac 339  Q
    ||||||||||||||||||||||    
T  24323476 agtcggacacgactcataaaac 24323497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 219 - 339
Target Start/End: Original strand, 36123688 - 36123808
Alignment:
Q  219 atgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttga 318  Q
    |||||||||||||||||| ||||||||||||||||| |||||||||||  ||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  36123688 atgaaagggagggccgaaacccggaaaaagaaattaaatcttaatcaaatgcggaaaagtaaccctcgcttgatcagcagctaacacatggttaatttga 36123787  T
Q  319 gtcggacacgactcataaaac 339  Q
    |||||||||||||||||||||    
T  36123788 gtcggacacgactcataaaac 36123808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 247 - 339
Target Start/End: Complemental strand, 40342801 - 40342709
Alignment:
Q  247 agaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaac 339  Q
    |||||||||||||||||||| |||  ||||| || |||  ||| |||||||| |||||||||  |||||||||||||| | || |||||||||    
T  40342801 agaaattacatcttaatcaaacgcaaaaaagaaatcccttcttaatcagcagttaacaaatgactaatttgagtcggataagagtcataaaac 40342709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 1e-50; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 218 - 339
Target Start/End: Complemental strand, 39181046 - 39180925
Alignment:
Q  218 gatgaaagggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttg 317  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||||||||    
T  39181046 gatgaaaggaagggccgaagcccggaaaaagaaattacatcttaatcaagtgcggaaaagtaactctcgcttgatcagcagctaacaaatggttaatttg 39180947  T
Q  318 agtcggacacgactcataaaac 339  Q
    ||||||||| ||||||||||||    
T  39180946 agtcggacatgactcataaaac 39180925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 225 - 338
Target Start/End: Complemental strand, 5699804 - 5699691
Alignment:
Q  225 gggagggccgaagcccggaaaaagaaattacatcttaatcaagcgcggaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcgga 324  Q
    |||||||||||||| |  ||| |||||||||||||||||||| | |  ||||| |||||| |||||||||||||||||||||||  ||||||||||||||    
T  5699804 gggagggccgaagctcaaaaagagaaattacatcttaatcaaacacataaaagaaacccctgcttgatcagcagctaacaaatgactaatttgagtcgga 5699705  T
Q  325 cacgactcataaaa 338  Q
    || |||||||||||    
T  5699704 caagactcataaaa 5699691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 272 - 339
Target Start/End: Complemental strand, 14138002 - 14137935
Alignment:
Q  272 gaaaagtaacccccgcttgatcagcagctaacaaatggttaatttgagtcggacacgactcataaaac 339  Q
    |||||||||||||||||| |||| || ||||||||||  | |||| ||||| ||| ||||||||||||    
T  14138002 gaaaagtaacccccgcttaatcatcaactaacaaatgacttatttaagtcgaacatgactcataaaac 14137935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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