View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7842_high_4 (Length: 328)

Name: NF7842_high_4
Description: NF7842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7842_high_4
NF7842_high_4
[»] chr3 (3 HSPs)
chr3 (235-319)||(347740-347824)
chr3 (100-148)||(347889-347937)
chr3 (154-192)||(347823-347861)
[»] chr1 (1 HSPs)
chr1 (191-242)||(33317497-33317548)


Alignment Details
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 235 - 319
Target Start/End: Complemental strand, 347824 - 347740
Alignment:
Q  235 tggaaacccatctgaatctcaatcttgaaaaatttgtaacatggattccccttatgccttgatacttgatcatcatttttcttct 319  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  347824 tggaaacccatctgaatctcaatcttgaaaaatttgtaacatggattccccttatgccttgatacttgatcatcatttttcttct 347740  T

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Target: chr3; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 347937 - 347889
Alignment:
Q  100 tcaaaacatcggatcctatgttttagccaataacaaccattgtgttaaa 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  347937 tcaaaacatcggatcctatgttttagccaataacaaccattgtgttaaa 347889  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 154 - 192
Target Start/End: Complemental strand, 347861 - 347823
Alignment:
Q  154 aaagtcgagcatattcacttatgtggtagactaactatg 192  Q
    |||||||||||| || |||||||||||||||||||||||    
T  347861 aaagtcgagcatcttaacttatgtggtagactaactatg 347823  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 191 - 242
Target Start/End: Original strand, 33317497 - 33317548
Alignment:
Q  191 tgttcgttggcattgtttgatggcacctaacctttaggcaaacctggaaacc 242  Q
    |||| |||||||||||||||||||||||||||| |  |||||| ||||||||    
T  33317497 tgtttgttggcattgtttgatggcacctaacctctttgcaaacatggaaacc 33317548  T

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