View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7842_high_7 (Length: 239)
Name: NF7842_high_7
Description: NF7842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7842_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 19 - 225
Target Start/End: Complemental strand, 5516643 - 5516437
Alignment:
| Q |
19 |
accattaatggtccggttcagnnnnnnngaactatagtaacagttcagtttggtttaattttcttcttgaaccgaaccataaacaatctaaaataccaca |
118 |
Q |
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| T |
5516643 |
accattaatggtccggttcagtttttttgaactatagtaacagttcagtttggtttagttttcttcttgaaccgaaccataaacaatctaaaataccaca |
5516544 |
T |
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| Q |
119 |
attgttaccacaggtcaggaatggaacaaaaacgagtttgagggagataaaatcaaagctaaatttgctcaaaaggtatatatttattggcttcaggtct |
218 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5516543 |
gttgttactacaggtcaggaatggaacaaaaacgagtttgagggagataaaatcaaagcgaaatttgctcaaaaggtatatatttattggcttcaggtct |
5516444 |
T |
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| Q |
219 |
acttcat |
225 |
Q |
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||||||| |
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| T |
5516443 |
acttcat |
5516437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 36928031 - 36927989
Alignment:
| Q |
56 |
taacagttcagtttggtttaattttcttcttgaaccgaaccat |
98 |
Q |
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| T |
36928031 |
taacagttcagtttggtttaattttcatctcaaaccgaaccat |
36927989 |
T |
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