View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7842_low_2 (Length: 519)
Name: NF7842_low_2
Description: NF7842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7842_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 12 - 502
Target Start/End: Complemental strand, 5412841 - 5412351
Alignment:
| Q |
12 |
gaatatactaagctgaagtggtcggggtctcatggaattaaggtgagaaataacattggagaccaaactcgttatttaaagtgagaaatgaaattaatca |
111 |
Q |
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| T |
5412841 |
gaatatactaagctgaagtggtcggggtctcatggaattaaggtgagaaataacattggagatcaaactcgttatttaaagtgagaaatgaaattaatca |
5412742 |
T |
|
| Q |
112 |
aagaatacaaaccaatgcaatgtaatttcgtgatgtactcgtgatacacggttttgtgatatttagcatt-attcattaattttttgtcatgtcgtgaaa |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5412741 |
aagaatacaaaccaatgcaatgtaatttcgtgatgtactcgtgatacacggttttgtgatatttagcattaattcattaattttttgtcatgtcgtgaaa |
5412642 |
T |
|
| Q |
211 |
gtttaatattttttgttaaactcattcatcattcatttaacaacagaataactacaaaaaataatttggttcatcgaggggtggtttcaacatgttctat |
310 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5412641 |
gtttaatattttttgttaaactcatttatcattcatttaacaacagaataactacaaagaataatttggttcatcgagaggtggtttcaacatgttctat |
5412542 |
T |
|
| Q |
311 |
attgtgcttcagagggtgctattaagaagaaacaataaaacatcnnnnnnnggagtgtgacttttacgacgacctttagcgtctcgttctttgttggttg |
410 |
Q |
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| T |
5412541 |
attttgcttcagagggtgctattaagaagaaacaatcatacatcttttttt-gagtgtgacttttacgacgacctttagcgtctcgttctttgttggttg |
5412443 |
T |
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| Q |
411 |
gggatctactgtgctcaacccgttgatattggttctcacactcttcagtttagcggtgctcatgtctcttcacaaaggaaatttgttcaggc |
502 |
Q |
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| T |
5412442 |
gggatctacagtgctcaacccgttgatattggttctcacgcccttcagtttagcggtgctcatgtctcttcacaaaggaaatttgttcaggc |
5412351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 86; Significance: 7e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 12 - 157
Target Start/End: Complemental strand, 10308990 - 10308845
Alignment:
| Q |
12 |
gaatatactaagctgaagtggtcggggtctcatggaattaaggtgagaaataacattggagaccaaactcgttatttaaagtgagaaatgaaattaatca |
111 |
Q |
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|||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||| ||||| |||||| | ||||| | |||||||||||||||||| |
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| T |
10308990 |
gaatatactaagttgaagtggtcgtggtctcatggaattaaggtgtgaaatagcattagagacaaaactcatcatttagaaagagaaatgaaattaatca |
10308891 |
T |
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| Q |
112 |
aagaatacaaaccaatgcaatgtaatttcgtgatgtactcgtgata |
157 |
Q |
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| T |
10308890 |
aagaatacaaactggtgcaatgtaatttcgtgaggtactcgtgata |
10308845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 144
Target Start/End: Complemental strand, 33418137 - 33418010
Alignment:
| Q |
16 |
atactaagctgaagtggtcggggtctcatggaattaaggtgagaaataacattggagaccaaactcgttatttaaagtgagaaatgaaattaatcaaaga |
115 |
Q |
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|||| ||| ||||||||||| ||||||||||||||||| ||||| |||| ||||| ||||||||| | || | ||| |||||| |||||||| ||| | |
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| T |
33418137 |
ataccaagttgaagtggtcgtggtctcatggaattaagctgagagttaactttggataccaaactcatcatct-aagaaagaaattaaattaattaaaca |
33418039 |
T |
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| Q |
116 |
atacaaaccaatgcaatgtaatttcgtga |
144 |
Q |
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|||||| | | |||||||||||| |||| |
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| T |
33418038 |
atacaagtcgaagcaatgtaattttgtga |
33418010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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