View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7842_low_4 (Length: 370)
Name: NF7842_low_4
Description: NF7842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7842_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 17 - 351
Target Start/End: Original strand, 43781063 - 43781401
Alignment:
| Q |
17 |
agttggaatactttgtacatcataggtggtttttgaagaattgaaacagctactgtgaaactgtggaactataacgttacacccttgaatactttgtaca |
116 |
Q |
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| T |
43781063 |
agttggaatactttgtacatcataggtggtttttgaagaattgaaacagctactgtgaaactgtggaactataacgttacacccttggatactttgtaca |
43781162 |
T |
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| Q |
117 |
tcatagatggtttctgaagtggattctggattgttatctagtaccatggtgtttattttctttctttttgcattgatagcatattttacctcaaaacttt |
216 |
Q |
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| T |
43781163 |
tcatagatggtttctgaagtggattctggattgttatctagtaccatggtgtttattttctttctttttgcattgatagcatattttgcctcaaaacttt |
43781262 |
T |
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| Q |
217 |
tatatacatctcatttgcattttctttatgatatataggaatggat----tctctccannnnnnnctctcatgtttgcaatctcacgcttcaacaatttt |
312 |
Q |
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| T |
43781263 |
tatatacaactcatttgcattttctttatgatatataggaatggatggattctctccatttttctctctcatgtttgcaatctcacgcttcaacaatttt |
43781362 |
T |
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| Q |
313 |
tgctcatctttaatatctcctttgtattcaactgttcat |
351 |
Q |
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| T |
43781363 |
tgctcatctttaatatctcctttgtattcaactgttcat |
43781401 |
T |
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