View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7842_low_5 (Length: 357)
Name: NF7842_low_5
Description: NF7842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7842_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 17 - 339
Target Start/End: Complemental strand, 47751258 - 47750936
Alignment:
| Q |
17 |
agtcttcaaccactcatttaattcatccattgactctccaagtcttctcattcccaccctcctttctcctacttatgctcgtgtgcatctcccactcccc |
116 |
Q |
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| T |
47751258 |
agtcttcaaccactcatttaattcatccattgactctccaagtcttctcattcccaccctcctttcttctacttatgctcgtgtgcatctcccactcccc |
47751159 |
T |
|
| Q |
117 |
agggtcatctctaaactgataattgtcgcatcatcccattcatatctagtatggttgagctatacgaataacnnnnnnnnccgacaaattttctttccat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |
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| T |
47751158 |
agggtcatctctaaactgataattgtcgcatcatcccattcatatctagtatggttgagctatacgaataacaaaaaaaaccgacaatttttttttccat |
47751059 |
T |
|
| Q |
217 |
cacccgcatttatttatattcacaaccgtccttgacccccgaaacctgcatgtgtaatgtgtttgagtaatgtataactccattaggccaaataaaattt |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47751058 |
cacccgcatttatttatattcacaaccgtccttgacccccgaaacctgcatgtgtaatgtgtttgagtaatgtataactccattaggccaaataaaattt |
47750959 |
T |
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| Q |
317 |
tgaatttatagataataactagc |
339 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
47750958 |
tgaatttatagataataactagc |
47750936 |
T |
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